Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL355802.3-201ENST00000607571 545 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AL356585.4-201ENST00000623078 1229 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AC016717.3-201ENST00000624730 554 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AC243829.7-201ENST00000633081 225 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AC002543.1-201ENST00000299783 1954 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 U3.12-201ENST00000364498 214 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 RNU1-78P-201ENST00000391248 165 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 U6atac.2-201ENST00000408644 118 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 RNU2-49P-201ENST00000410666 184 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 OR51A3P-201ENST00000413596 924 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC009310.1-201ENST00000414414 451 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AL590233.1-201ENST00000430017 456 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AL512844.2-201ENST00000433990 593 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 RPL32P28-201ENST00000443577 397 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 PRPS1P1-201ENST00000445305 876 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC005908.1-201ENST00000468701 347 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC098591.2-201ENST00000510152 315 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AL359273.1-201ENST00000510918 627 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 SNORA4.4-201ENST00000515921 135 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 RNU7-40P-201ENST00000516397 64 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC025918.2-201ENST00000558683 763 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AP001542.2-201ENST00000593141 364 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC068313.1-201ENST00000604028 1008 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC026790.2-201ENST00000606282 430 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC005021.1-201ENST00000608730 355 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 MIR8081-201ENST00000611533 95 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AL136981.2-201ENST00000617319 734 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC068724.3-201ENST00000625906 87 ntBASIC0.64□□□□□ -2.31
LINC00643Q86TS7 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
LINC00643Q86TS7 RNU4-13P-201ENST00000364019 141 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC0.63□□□□□ -2.31
LINC00643Q86TS7 MIR146A-201ENST00000385201 99 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 RNU6-750P-201ENST00000390946 107 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 SNORA40.6-201ENST00000391153 128 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 SNORA40.18-201ENST00000391200 128 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 BTF3P4-201ENST00000418852 495 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC0.63□□□□□ -2.31
LINC00643Q86TS7 RNF19BPX-201ENST00000426224 625 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC0.63□□□□□ -2.31
LINC00643Q86TS7 ARPC3P5-201ENST00000448802 534 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AC004223.1-201ENST00000479840 271 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AC112198.4-201ENST00000515450 351 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 RNU6-902P-201ENST00000517212 91 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AC011611.5-201ENST00000552477 578 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AC013244.2-201ENST00000603396 103 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 AC087241.4-201ENST00000612441 480 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
LINC00643Q86TS7 ATP8A2P3-201ENST00000426792 1536 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 SUCLA2P2-201ENST00000417269 1309 ntBASIC0.63□□□□□ -2.31
LINC00643Q86TS7 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC0.62□□□□□ -2.31
LINC00643Q86TS7 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
LINC00643Q86TS7 RNU4-91P-201ENST00000364778 135 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC0.62□□□□□ -2.31
LINC00643Q86TS7 MIR583-201ENST00000384846 75 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 MIR325-201ENST00000385260 98 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 MTND4LP20-201ENST00000402379 270 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC0.62□□□□□ -2.31
LINC00643Q86TS7 AC008280.1-201ENST00000418851 412 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 BX276092.3-201ENST00000424182 230 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 OFD1P12Y-201ENST00000427963 1207 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 OFD1P13Y-201ENST00000431179 1232 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 AC245047.4-201ENST00000433189 144 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 AC010881.1-201ENST00000433830 235 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 RPS15AP5-201ENST00000436276 388 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC0.62□□□□□ -2.31
LINC00643Q86TS7 AL133373.1-201ENST00000497098 94 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 AC111193.1-201ENST00000504097 155 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC0.62□□□□□ -2.31
LINC00643Q86TS7 UBL5P1-201ENST00000507979 193 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC0.62□□□□□ -2.31
LINC00643Q86TS7 RNA5SP112-201ENST00000515937 99 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 RNU6-1282P-201ENST00000516735 96 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC0.62□□□□□ -2.31
LINC00643Q86TS7 EIF5A2P1-201ENST00000564027 460 ntBASIC0.62□□□□□ -2.31
LINC00643Q86TS7 AL356432.3-201ENST00000568952 465 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms