Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC0.97□□□□□ -2.25
CHD9Q3L8U1 AC008669.1-201ENST00000565823 2178 ntBASIC0.97□□□□□ -2.25
CHD9Q3L8U1 AL513343.1-201ENST00000451818 792 ntBASIC0.97□□□□□ -2.25
CHD9Q3L8U1 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
CHD9Q3L8U1 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
CHD9Q3L8U1 RNU6-56P-201ENST00000516986 93 ntBASIC0.97□□□□□ -2.25
CHD9Q3L8U1 AC036111.3-201ENST00000526389 112 ntBASIC0.97□□□□□ -2.25
CHD9Q3L8U1 AP005597.4-201ENST00000526762 229 ntBASIC0.97□□□□□ -2.25
CHD9Q3L8U1 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC0.97□□□□□ -2.25
CHD9Q3L8U1 AC069304.3-201ENST00000603938 1084 ntBASIC0.97□□□□□ -2.25
CHD9Q3L8U1 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC0.97□□□□□ -2.25
CHD9Q3L8U1 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC0.96□□□□□ -2.26
CHD9Q3L8U1 ZNF734P-201ENST00000419494 1534 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 RNU2-71P-201ENST00000411395 189 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 AL512504.1-201ENST00000415494 778 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 RPL23AP33-201ENST00000442301 452 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 HSFY3P-201ENST00000444242 1191 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC0.96□□□□□ -2.26
CHD9Q3L8U1 AC010301.1-201ENST00000473936 355 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 MTCO3P35-201ENST00000485582 781 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC0.96□□□□□ -2.26
CHD9Q3L8U1 NBEAP1-201ENST00000554452 979 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC0.96□□□□□ -2.26
CHD9Q3L8U1 MIR6086-201ENST00000638065 55 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC0.96□□□□□ -2.26
CHD9Q3L8U1 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
CHD9Q3L8U1 MIR1285-1-201ENST00000408593 84 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 RPS26P56-201ENST00000444468 240 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
CHD9Q3L8U1 AC022493.1-201ENST00000492984 337 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC0.96□□□□□ -2.26
CHD9Q3L8U1 AC022447.3-201ENST00000506865 495 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC0.96□□□□□ -2.26
CHD9Q3L8U1 MRPS33P3-201ENST00000513456 322 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 AP003717.3-201ENST00000544832 1180 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 AP001350.1-201ENST00000601906 1524 ntBASIC0.96□□□□□ -2.26
CHD9Q3L8U1 AC007342.9-201ENST00000623877 1385 ntBASIC0.95□□□□□ -2.26
CHD9Q3L8U1 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
CHD9Q3L8U1 RNU1-109P-201ENST00000383960 147 ntBASIC0.95□□□□□ -2.26
CHD9Q3L8U1 RNU6-35P-201ENST00000384530 107 ntBASIC0.95□□□□□ -2.26
CHD9Q3L8U1 HNRNPDP2-201ENST00000406475 478 ntBASIC0.95□□□□□ -2.26
CHD9Q3L8U1 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC0.95□□□□□ -2.26
CHD9Q3L8U1 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC0.95□□□□□ -2.26
CHD9Q3L8U1 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC0.95□□□□□ -2.26
CHD9Q3L8U1 SNRPEP4-201ENST00000435815 279 ntBASIC0.95□□□□□ -2.26
CHD9Q3L8U1 ARF4P4-201ENST00000439608 520 ntBASIC0.95□□□□□ -2.26
CHD9Q3L8U1 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.95□□□□□ -2.26
CHD9Q3L8U1 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC0.95□□□□□ -2.26
CHD9Q3L8U1 AC005498.1-201ENST00000592125 465 ntBASIC0.95□□□□□ -2.26
CHD9Q3L8U1 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC0.95□□□□□ -2.26
CHD9Q3L8U1 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC0.95□□□□□ -2.26
CHD9Q3L8U1 OR6C66P-201ENST00000414917 930 ntBASIC0.95□□□□□ -2.26
CHD9Q3L8U1 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC0.95□□□□□ -2.26
CHD9Q3L8U1 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC0.95□□□□□ -2.26
CHD9Q3L8U1 RN7SKP179-201ENST00000516126 217 ntBASIC0.95□□□□□ -2.26
CHD9Q3L8U1 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
CHD9Q3L8U1 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
CHD9Q3L8U1 MIR548Y-201ENST00000582739 110 ntBASIC0.95□□□□□ -2.26
CHD9Q3L8U1 AL390240.1-201ENST00000612950 384 ntBASIC0.95□□□□□ -2.26
CHD9Q3L8U1 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC0.95□□□□□ -2.26
CHD9Q3L8U1 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 MIR330-201ENST00000362196 94 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 RNU6-600P-201ENST00000362524 99 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 TRAPPC13P1-201ENST00000435991 1062 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC107032.1-201ENST00000485945 480 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC111193.1-201ENST00000504097 155 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC007275.1-201ENST00000621243 671 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 RNU6-697P-201ENST00000363348 107 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC018630.2-202ENST00000422992 927 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 CCNB1IP1P3-201ENST00000454702 829 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 NF1P3-201ENST00000457709 450 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC104806.1-201ENST00000508720 308 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC114786.4-201ENST00000508771 728 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC114797.1-201ENST00000514003 728 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 MTCO2P32-201ENST00000514865 403 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AP003072.5-201ENST00000623872 773 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 Y_RNA.60-201ENST00000362831 98 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 SNORA62.1-201ENST00000364287 154 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 RNA5SP498-201ENST00000411342 120 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 GPM6BP3-201ENST00000442797 145 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC004022.1-201ENST00000447766 1066 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 HMGN2P16-201ENST00000456802 261 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 RPL7P18-201ENST00000478965 734 ntBASIC0.94□□□□□ -2.26
CHD9Q3L8U1 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms