Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 DOCK11P1-201ENST00000553480 5932 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXC1Q12948 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.23□□□□□ -1.57
FOXC1Q12948 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
FOXC1Q12948 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXC1Q12948 AC010329.2-201ENST00000595195 2737 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXC1Q12948 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
FOXC1Q12948 AL360270.2-201ENST00000562952 5985 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 RNU6-137P-201ENST00000363680 108 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 RNY1P11-201ENST00000363759 113 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 RNU1-24P-201ENST00000364285 165 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 RNU6-159P-201ENST00000391080 106 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 HLFP1-201ENST00000402375 499 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 RNA5SP56-201ENST00000410277 118 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 LAMTOR3P1-201ENST00000428620 370 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC5.23□□□□□ -1.57
FOXC1Q12948 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.23□□□□□ -1.57
FOXC1Q12948 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.23□□□□□ -1.57
FOXC1Q12948 IGLV3-24-201ENST00000517477 197 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.23□□□□□ -1.57
FOXC1Q12948 MIR4284-201ENST00000578924 81 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 MIR4311-201ENST00000580794 100 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 AL357075.2-201ENST00000614906 189 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 AL773545.4-201ENST00000637262 310 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 AL513478.4-201ENST00000641636 310 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
FOXC1Q12948 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXC1Q12948 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXC1Q12948 AC009541.1-201ENST00000438279 2662 ntBASIC5.23□□□□□ -1.57
FOXC1Q12948 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.23□□□□□ -1.57
FOXC1Q12948 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXC1Q12948 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
FOXC1Q12948 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
FOXC1Q12948 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
FOXC1Q12948 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXC1Q12948 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
FOXC1Q12948 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC5.23□□□□□ -1.57
FOXC1Q12948 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXC1Q12948 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
FOXC1Q12948 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
FOXC1Q12948 AC133552.1-201ENST00000569988 4007 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 AC099654.2-201ENST00000433031 1980 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
FOXC1Q12948 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.22□□□□□ -1.57
FOXC1Q12948 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.22□□□□□ -1.57
FOXC1Q12948 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
FOXC1Q12948 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.22□□□□□ -1.57
FOXC1Q12948 Y_RNA.101-201ENST00000363154 102 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 RNU1-74P-201ENST00000384108 171 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 U8.10-201ENST00000384260 133 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 SNORA36C-201ENST00000384289 132 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 MIR10A-201ENST00000385043 110 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 MT-TC-201ENST00000387405 66 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 RNU6-1248P-201ENST00000391096 64 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.22□□□□□ -1.57
FOXC1Q12948 OR2AM1P-201ENST00000422137 422 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 RN7SL189P-201ENST00000468631 289 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC5.22□□□□□ -1.57
FOXC1Q12948 AP003327.1-201ENST00000529684 127 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 AC126615.2-201ENST00000553003 515 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 UBL5P4-201ENST00000562584 236 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC5.22□□□□□ -1.57
FOXC1Q12948 AC024153.1-201ENST00000603103 365 ntBASIC5.22□□□□□ -1.57
FOXC1Q12948 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
FOXC1Q12948 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
FOXC1Q12948 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.22□□□□□ -1.57
FOXC1Q12948 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.22□□□□□ -1.57
FOXC1Q12948 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC5.22□□□□□ -1.57
FOXC1Q12948 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
FOXC1Q12948 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
FOXC1Q12948 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.22□□□□□ -1.57
FOXC1Q12948 AC068700.1-201ENST00000565862 3754 ntBASIC5.21□□□□□ -1.57
FOXC1Q12948 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.21□□□□□ -1.57
FOXC1Q12948 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.21□□□□□ -1.57
FOXC1Q12948 AP000547.3-204ENST00000588548 2523 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
FOXC1Q12948 AP000866.6-201ENST00000638898 3579 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
FOXC1Q12948 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.21□□□□□ -1.58
FOXC1Q12948 SNURFL-201ENST00000309296 343 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 RNA5SP479-201ENST00000364858 117 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 RNU6-1180P-201ENST00000364935 107 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 U8.6-201ENST00000364939 135 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 SNORA26.2-201ENST00000390922 122 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 AL035079.1-201ENST00000405210 287 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC5.21□□□□□ -1.58
FOXC1Q12948 AL590399.4-201ENST00000436561 601 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 AC073264.2-201ENST00000448886 166 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 U8.19-201ENST00000459095 133 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.21□□□□□ -1.58
FOXC1Q12948 RNU6-772P-201ENST00000516042 105 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 Y_RNA.677-201ENST00000516401 85 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 AC027667.1-201ENST00000545814 304 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.21□□□□□ -1.58
FOXC1Q12948 MIR3121-201ENST00000579680 77 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC5.21□□□□□ -1.58
FOXC1Q12948 DEFB117-201ENST00000602356 141 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 AL161798.1-201ENST00000604630 131 ntBASIC5.21□□□□□ -1.58
FOXC1Q12948 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms