Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
TFF3Q07654 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
TFF3Q07654 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC0.86□□□□□ -2.27
TFF3Q07654 RNU6-225P-201ENST00000384613 103 ntBASIC0.86□□□□□ -2.27
TFF3Q07654 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
TFF3Q07654 AL138880.1-201ENST00000405824 642 ntBASIC0.86□□□□□ -2.27
TFF3Q07654 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC0.86□□□□□ -2.27
TFF3Q07654 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC0.86□□□□□ -2.27
TFF3Q07654 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.86□□□□□ -2.27
TFF3Q07654 AC244033.1-201ENST00000426826 870 ntBASIC0.86□□□□□ -2.27
TFF3Q07654 AL590233.1-201ENST00000430017 456 ntBASIC0.86□□□□□ -2.27
TFF3Q07654 RPS29P28-201ENST00000446439 141 ntBASIC0.86□□□□□ -2.27
TFF3Q07654 RPS27P1-201ENST00000450552 247 ntBASIC0.86□□□□□ -2.27
TFF3Q07654 RPL21P134-201ENST00000453468 483 ntBASIC0.86□□□□□ -2.27
TFF3Q07654 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC0.86□□□□□ -2.27
TFF3Q07654 AP001804.3-201ENST00000525146 880 ntBASIC0.86□□□□□ -2.27
TFF3Q07654 CBX3P7-201ENST00000532876 502 ntBASIC0.86□□□□□ -2.27
TFF3Q07654 HSPE1P4-201ENST00000550617 308 ntBASIC0.86□□□□□ -2.27
TFF3Q07654 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.86□□□□□ -2.27
TFF3Q07654 MTCYBP23-201ENST00000558717 1102 ntBASIC0.86□□□□□ -2.27
TFF3Q07654 CYP3A137P-201ENST00000562436 69 ntBASIC0.86□□□□□ -2.27
TFF3Q07654 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC0.86□□□□□ -2.27
TFF3Q07654 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC0.86□□□□□ -2.27
TFF3Q07654 TEX21P-201ENST00000447107 1476 ntBASIC0.86□□□□□ -2.27
TFF3Q07654 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
TFF3Q07654 Y_RNA.36-201ENST00000362602 112 ntBASIC0.85□□□□□ -2.27
TFF3Q07654 RNU6-335P-201ENST00000364563 113 ntBASIC0.85□□□□□ -2.27
TFF3Q07654 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
TFF3Q07654 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC0.85□□□□□ -2.27
TFF3Q07654 AC055731.1-201ENST00000474387 401 ntBASIC0.85□□□□□ -2.27
TFF3Q07654 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
TFF3Q07654 NDUFB4P2-201ENST00000509515 391 ntBASIC0.85□□□□□ -2.27
TFF3Q07654 RNU7-193P-201ENST00000516723 65 ntBASIC0.85□□□□□ -2.27
TFF3Q07654 AC135279.1-201ENST00000543493 504 ntBASIC0.85□□□□□ -2.27
TFF3Q07654 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.85□□□□□ -2.27
TFF3Q07654 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC0.85□□□□□ -2.27
TFF3Q07654 OR1M4P-201ENST00000589199 287 ntBASIC0.85□□□□□ -2.27
TFF3Q07654 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC0.85□□□□□ -2.27
TFF3Q07654 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC0.85□□□□□ -2.27
TFF3Q07654 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
TFF3Q07654 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
TFF3Q07654 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
TFF3Q07654 SNORA62.1-201ENST00000364287 154 ntBASIC0.84□□□□□ -2.27
TFF3Q07654 RNA5SP498-201ENST00000411342 120 ntBASIC0.84□□□□□ -2.27
TFF3Q07654 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC0.84□□□□□ -2.27
TFF3Q07654 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC0.84□□□□□ -2.27
TFF3Q07654 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.84□□□□□ -2.27
TFF3Q07654 AC027575.1-201ENST00000481064 460 ntBASIC0.84□□□□□ -2.27
TFF3Q07654 EIF4EP3-201ENST00000498782 656 ntBASIC0.84□□□□□ -2.27
TFF3Q07654 AC021146.2-201ENST00000504736 556 ntBASIC0.84□□□□□ -2.27
TFF3Q07654 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC0.84□□□□□ -2.27
TFF3Q07654 AC110792.2-201ENST00000510278 224 ntBASIC0.84□□□□□ -2.27
TFF3Q07654 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC0.84□□□□□ -2.27
TFF3Q07654 DPRXP5-201ENST00000604662 539 ntBASIC0.84□□□□□ -2.27
TFF3Q07654 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC0.84□□□□□ -2.27
TFF3Q07654 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC0.84□□□□□ -2.27
TFF3Q07654 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
TFF3Q07654 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
TFF3Q07654 RNU6-50P-201ENST00000362356 103 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 RNA5SP325-201ENST00000363756 130 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 RNU1-133P-201ENST00000364867 167 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 SNORA23-201ENST00000365128 182 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 Y_RNA.393-201ENST00000383936 102 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 SFR1P1-201ENST00000403720 688 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC0.83□□□□□ -2.28
TFF3Q07654 RPL21P90-201ENST00000415692 466 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 AC013268.2-201ENST00000420753 337 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 HSPE1P21-201ENST00000438283 308 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 ARL5AP3-201ENST00000439327 386 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC0.83□□□□□ -2.28
TFF3Q07654 RFC5P1-201ENST00000454419 874 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 CABYRP1-201ENST00000465493 1045 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 SETP11-201ENST00000473027 690 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 AC107032.1-201ENST00000485945 480 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC0.83□□□□□ -2.28
TFF3Q07654 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC0.83□□□□□ -2.28
TFF3Q07654 COL6A4P2-205ENST00000509855 506 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC0.83□□□□□ -2.28
TFF3Q07654 RNA5SP384-201ENST00000516615 116 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 RNU6-1073P-201ENST00000517182 106 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 EIF4EP5-201ENST00000528228 640 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC0.83□□□□□ -2.28
TFF3Q07654 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC0.83□□□□□ -2.28
TFF3Q07654 AC011712.1-201ENST00000588959 234 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 AC106791.2-201ENST00000604680 391 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 AP001485.1-201ENST00000604799 199 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 AC103810.9-201ENST00000606688 112 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC0.83□□□□□ -2.28
TFF3Q07654 AL138880.2-201ENST00000616214 239 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 AL449363.1-201ENST00000617815 186 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 AC110079.1-202ENST00000635213 138 ntBASIC0.83□□□□□ -2.28
TFF3Q07654 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
TFF3Q07654 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC0.82□□□□□ -2.28
TFF3Q07654 AC007785.2-201ENST00000598627 1916 ntBASIC0.82□□□□□ -2.28
TFF3Q07654 SNORA38-201ENST00000363946 132 ntBASIC0.82□□□□□ -2.28
TFF3Q07654 SNORA22-201ENST00000383907 134 ntBASIC0.82□□□□□ -2.28
TFF3Q07654 SNORA22C-201ENST00000384614 134 ntBASIC0.82□□□□□ -2.28
TFF3Q07654 RNU6-19P-201ENST00000384718 107 ntBASIC0.82□□□□□ -2.28
TFF3Q07654 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC0.82□□□□□ -2.28
TFF3Q07654 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms