Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC006927.2-201ENST00000639256 389 ntBASIC1.84□□□□□ -2.11
COL5A3P25940 AC013437.2-201ENST00000639587 677 ntBASIC1.84□□□□□ -2.11
COL5A3P25940 AC138915.1-201ENST00000565427 1685 ntBASIC1.84□□□□□ -2.11
COL5A3P25940 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
COL5A3P25940 RNU4-52P-201ENST00000384209 138 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
COL5A3P25940 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC1.83□□□□□ -2.12
COL5A3P25940 Z85995.1-201ENST00000415547 335 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC1.83□□□□□ -2.12
COL5A3P25940 RPS15AP40-201ENST00000419621 391 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 AL513185.2-201ENST00000425543 193 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 ZNF736P11Y-201ENST00000442535 1213 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 ZNF736P12Y-201ENST00000443152 1243 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 HSFY3P-201ENST00000444242 1191 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 ZNF736P4Y-201ENST00000454995 1243 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.83□□□□□ -2.12
COL5A3P25940 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC1.83□□□□□ -2.12
COL5A3P25940 PRELID3BP4-201ENST00000515476 571 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.83□□□□□ -2.12
COL5A3P25940 AC090616.5-202ENST00000582111 297 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC1.83□□□□□ -2.12
COL5A3P25940 AL355812.1-201ENST00000603215 216 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
COL5A3P25940 AP003476.1-201ENST00000623984 516 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
COL5A3P25940 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
COL5A3P25940 AP001350.1-201ENST00000601906 1524 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
COL5A3P25940 RNU6-1339P-201ENST00000363574 91 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 SNORD114-22-201ENST00000365423 72 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.83□□□□□ -2.12
COL5A3P25940 AP002784.2-201ENST00000397300 549 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.83□□□□□ -2.12
COL5A3P25940 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC1.83□□□□□ -2.12
COL5A3P25940 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC1.83□□□□□ -2.12
COL5A3P25940 TRBV26OR9-2-201ENST00000432077 293 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC1.83□□□□□ -2.12
COL5A3P25940 GTF2IP7-202ENST00000436677 309 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 SYPL1P1-201ENST00000473622 768 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 AC104982.1-201ENST00000478775 574 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC1.83□□□□□ -2.12
COL5A3P25940 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC1.83□□□□□ -2.12
COL5A3P25940 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC1.83□□□□□ -2.12
COL5A3P25940 AC104057.1-201ENST00000515547 497 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 RNA5SP468-201ENST00000516782 93 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 AC087894.1-201ENST00000538359 518 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.83□□□□□ -2.12
COL5A3P25940 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC1.83□□□□□ -2.12
COL5A3P25940 AP002802.2-201ENST00000605877 235 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 AC144521.1-201ENST00000607148 956 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC1.83□□□□□ -2.12
COL5A3P25940 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.83□□□□□ -2.12
COL5A3P25940 AC068620.4-201ENST00000636730 1182 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 AL445984.1-201ENST00000637834 659 ntBASIC1.83□□□□□ -2.12
COL5A3P25940 ZNF849P-201ENST00000594711 1566 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
COL5A3P25940 RNU6-600P-201ENST00000362524 99 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 RNU6-799P-201ENST00000363567 107 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 RNU6-1151P-201ENST00000384684 107 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 AL138880.1-201ENST00000405824 642 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC1.82□□□□□ -2.12
COL5A3P25940 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC1.82□□□□□ -2.12
COL5A3P25940 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC1.82□□□□□ -2.12
COL5A3P25940 AC096632.1-201ENST00000427395 310 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC1.82□□□□□ -2.12
COL5A3P25940 AC004865.1-201ENST00000442276 1003 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC1.82□□□□□ -2.12
COL5A3P25940 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC1.82□□□□□ -2.12
COL5A3P25940 ATP5EP1-201ENST00000510257 156 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 AC093752.1-206ENST00000511823 336 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 RNA5SP61-201ENST00000516453 100 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC1.82□□□□□ -2.12
COL5A3P25940 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC1.82□□□□□ -2.12
COL5A3P25940 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC1.82□□□□□ -2.12
COL5A3P25940 AC104072.1-201ENST00000568817 668 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC1.82□□□□□ -2.12
COL5A3P25940 AC126365.2-201ENST00000580630 379 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC1.82□□□□□ -2.12
COL5A3P25940 BNIP3P4-201ENST00000604946 565 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 AL583856.2-201ENST00000606298 543 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 AL139022.2-201ENST00000606934 443 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 AC007275.1-201ENST00000621243 671 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 AP000676.4-201ENST00000624659 623 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.82□□□□□ -2.12
COL5A3P25940 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.82□□□□□ -2.12
COL5A3P25940 AC073055.1-201ENST00000456901 1621 ntBASIC1.82□□□□□ -2.12
COL5A3P25940 RNY1-201ENST00000364228 113 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 SNORA67.1-201ENST00000364749 141 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 RNU6-1257P-201ENST00000384625 110 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 ERHP2-201ENST00000402323 299 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 SFR1P1-201ENST00000403720 688 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC1.81□□□□□ -2.12
COL5A3P25940 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC1.81□□□□□ -2.12
COL5A3P25940 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC1.81□□□□□ -2.12
COL5A3P25940 TAF13P2-201ENST00000416876 286 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 AC234064.1-201ENST00000436312 247 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms