Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SNRPGP9-201ENST00000456025 225 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC4.25□□□□□ -1.73
HMGB1P09429 AC026427.2-201ENST00000506228 536 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 AC118465.1-201ENST00000513820 1271 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 RNU6-572P-201ENST00000516724 80 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 RNU2-46P-201ENST00000517038 113 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 AC060788.1-201ENST00000521318 469 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.25□□□□□ -1.73
HMGB1P09429 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.25□□□□□ -1.73
HMGB1P09429 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC4.25□□□□□ -1.73
HMGB1P09429 NRBF2P5-201ENST00000603087 788 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 AC174048.1-201ENST00000603389 144 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HMGB1P09429 AC110994.2-201ENST00000635481 492 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HMGB1P09429 RIOK3P1-201ENST00000418778 1528 ntBASIC4.25□□□□□ -1.73
HMGB1P09429 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.25□□□□□ -1.73
HMGB1P09429 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.25□□□□□ -1.73
HMGB1P09429 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC4.24□□□□□ -1.73
HMGB1P09429 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HMGB1P09429 TTN-204ENST00000360870 18218 ntTSL 5 BASIC4.24□□□□□ -1.73
HMGB1P09429 RNU4-21P-201ENST00000362802 126 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HMGB1P09429 SNORA40.3-201ENST00000390964 122 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 MIR887-201ENST00000401258 79 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 RPS3AP3-201ENST00000411933 242 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 BX682237.1-201ENST00000415016 335 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 NPM1P11-201ENST00000417106 855 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.24□□□□□ -1.73
HMGB1P09429 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC4.24□□□□□ -1.73
HMGB1P09429 RPS24P1-201ENST00000438550 371 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 MTND6P13-201ENST00000443510 523 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 RPS29P31-201ENST00000446147 164 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HMGB1P09429 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC4.24□□□□□ -1.73
HMGB1P09429 SNORD105B-201ENST00000458770 79 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 RN7SL594P-201ENST00000470590 287 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.24□□□□□ -1.73
HMGB1P09429 AC022447.1-201ENST00000515358 464 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 RNU5F-8P-201ENST00000515941 111 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
HMGB1P09429 AP006245.1-201ENST00000522549 120 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 OR5B19P-201ENST00000531766 928 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.24□□□□□ -1.73
HMGB1P09429 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC4.24□□□□□ -1.73
HMGB1P09429 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC4.24□□□□□ -1.73
HMGB1P09429 AC068276.1-201ENST00000605793 379 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 MIR15A-201ENST00000607334 83 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC4.24□□□□□ -1.73
HMGB1P09429 UBE2Q2P2-203ENST00000613592 761 ntBASIC4.24□□□□□ -1.73
HMGB1P09429 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.24□□□□□ -1.73
HMGB1P09429 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HMGB1P09429 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HMGB1P09429 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HMGB1P09429 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HMGB1P09429 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.23□□□□□ -1.73
HMGB1P09429 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
HMGB1P09429 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HMGB1P09429 MFSD8-233ENST00000641482 4860 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 AC068647.1-201ENST00000489539 2265 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
HMGB1P09429 RNA5SP51-201ENST00000364750 119 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 Y_RNA.534-201ENST00000384599 112 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 RNY3P10-201ENST00000384764 102 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 CASP3-203ENST00000393588 677 ntTSL 4 BASIC4.23□□□□□ -1.73
HMGB1P09429 RPS3AP36-201ENST00000398190 775 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.23□□□□□ -1.73
HMGB1P09429 RNU6-1025P-201ENST00000410629 104 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.23□□□□□ -1.73
HMGB1P09429 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC4.23□□□□□ -1.73
HMGB1P09429 AL121769.1-201ENST00000469473 401 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 BET1P1-201ENST00000482276 359 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 AP000563.1-201ENST00000490865 758 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 EIF4EP3-201ENST00000498782 656 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 RNU6-581P-201ENST00000516214 105 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 RNU6-1315P-201ENST00000517187 99 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 HSPE1P20-201ENST00000538133 289 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC4.23□□□□□ -1.73
HMGB1P09429 AC091304.9-201ENST00000612091 226 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.23□□□□□ -1.73
HMGB1P09429 AC073073.2-201ENST00000609827 2578 ntBASIC4.23□□□□□ -1.73
HMGB1P09429 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
HMGB1P09429 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.23□□□□□ -1.73
HMGB1P09429 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.22□□□□□ -1.73
HMGB1P09429 AC004944.1-201ENST00000517807 3059 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HMGB1P09429 U3.26-201ENST00000391236 204 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 AL513475.1-201ENST00000406602 315 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 HMGN1P14-201ENST00000412459 517 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 AC114491.1-201ENST00000416095 246 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 RPL7P10-201ENST00000417407 739 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.22□□□□□ -1.73
HMGB1P09429 AC104850.1-201ENST00000435940 476 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 BRK1P2-201ENST00000442875 223 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HMGB1P09429 AC092001.1-201ENST00000453012 261 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 snoU13.22-201ENST00000459428 104 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 AC107626.1-201ENST00000471084 183 ntBASIC4.22□□□□□ -1.73
HMGB1P09429 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC4.22□□□□□ -1.73
HMGB1P09429 AC109927.2-201ENST00000506416 303 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms