Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXD4P09016 AL590639.1-201ENST00000456484 337 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.87□□□□□ -1.95
HOXD4P09016 RPS27AP1-201ENST00000475545 471 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AC021382.1-201ENST00000483523 359 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 LARP1BP2-201ENST00000486594 519 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 MTND2P33-201ENST00000506452 1031 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AC109464.2-201ENST00000510242 943 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 RNU6-1095P-201ENST00000516148 108 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 RNA5SP76-201ENST00000516277 87 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 RNU6-720P-201ENST00000516363 108 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AP003392.2-201ENST00000527269 208 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.87□□□□□ -1.95
HOXD4P09016 AP003122.4-201ENST00000530980 758 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXD4P09016 SETP7-201ENST00000552169 453 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 RPL21P5-201ENST00000554662 472 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.87□□□□□ -1.95
HOXD4P09016 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXD4P09016 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC2.87□□□□□ -1.95
HOXD4P09016 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXD4P09016 AC055876.1-202ENST00000567053 138 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 MIR3913-1-201ENST00000577744 102 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 MIR4474-201ENST00000579189 78 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXD4P09016 DEFB131E-202ENST00000602581 683 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AC012669.1-201ENST00000603209 283 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AC073648.5-201ENST00000603502 305 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AC004492.1-201ENST00000607036 742 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 MIR7106-201ENST00000612419 65 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AC008498.1-201ENST00000613012 531 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXD4P09016 AL110115.1-201ENST00000614396 364 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AL590099.1-201ENST00000615276 138 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXD4P09016 AC079597.1-201ENST00000624306 508 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXD4P09016 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HOXD4P09016 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXD4P09016 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD4P09016 MTND5P33-201ENST00000571250 1450 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 Y_RNA.41-201ENST00000362646 102 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 RNU6-359P-201ENST00000365466 108 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 SNORA44-201ENST00000384584 132 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 SNORD15B-201ENST00000384714 146 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 Y_RNA.599-201ENST00000410489 109 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 RNU2-47P-201ENST00000410649 186 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 RPS3AP3-201ENST00000411933 242 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.86□□□□□ -1.95
HOXD4P09016 CST9LP2-201ENST00000437612 320 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 AC108734.1-201ENST00000439549 399 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXD4P09016 MTND6P13-201ENST00000443510 523 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 SSXP4-201ENST00000451349 245 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.86□□□□□ -1.95
HOXD4P09016 snoU109.1-201ENST00000459339 135 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.86□□□□□ -1.95
HOXD4P09016 MLLT10P2-201ENST00000506434 249 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 KLHL2P1-201ENST00000508691 521 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 NDUFB4P2-201ENST00000509515 391 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXD4P09016 CDC42P4-201ENST00000510507 563 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXD4P09016 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXD4P09016 AC017037.2-201ENST00000513850 890 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 SNORA31.8-201ENST00000516327 108 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 MTCYBP20-201ENST00000524239 1129 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD4P09016 SNRPGP16-201ENST00000533275 226 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 AC123904.2-201ENST00000548059 300 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 HMGN1P30-201ENST00000589286 268 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 AC025165.5-201ENST00000602802 578 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 AC080078.2-201ENST00000603766 501 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 AP001506.1-201ENST00000615444 211 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 AC108479.2-201ENST00000617314 601 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 AL359740.1-201ENST00000624340 592 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 MIR6733-201ENST00000635723 61 ntBASIC2.86□□□□□ -1.95
HOXD4P09016 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD4P09016 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD4P09016 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXD4P09016 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HOXD4P09016 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HOXD4P09016 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXD4P09016 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HOXD4P09016 Y_RNA.3-201ENST00000362331 103 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 CCNG1P1-201ENST00000406783 885 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AL591034.1-201ENST00000407447 340 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 Y_RNA.619-201ENST00000410951 90 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD4P09016 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXD4P09016 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXD4P09016 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.85□□□□□ -1.95
HOXD4P09016 RPL35AP12-201ENST00000425362 338 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AC104651.1-201ENST00000427559 735 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.85□□□□□ -1.95
HOXD4P09016 AC104332.2-201ENST00000429959 156 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD4P09016 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXD4P09016 AC107083.1-201ENST00000439643 279 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms