Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 Y_RNA.72-201ENST00000362894 103 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 RNU5E-8P-201ENST00000363502 116 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 RNY1P12-201ENST00000364251 105 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 Y_RNA.255-201ENST00000364581 97 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 Y_RNA.529-201ENST00000384586 119 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 Y_RNA.535-201ENST00000384612 99 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 RNU6-606P-201ENST00000384721 111 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 MIR558-201ENST00000384920 94 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 MIR634-201ENST00000385208 97 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 Z92545.1-201ENST00000411782 234 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 OR1AA1P-201ENST00000419597 916 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AC005517.2-201ENST00000424673 553 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 SRIP2-201ENST00000428470 166 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.14□□□□□ -1.91
LMX1BO60663 AL159987.2-201ENST00000432754 307 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 MTATP6P16-201ENST00000434543 526 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
LMX1BO60663 AC079781.2-201ENST00000446424 169 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AC073415.1-201ENST00000449240 153 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.14□□□□□ -1.91
LMX1BO60663 snoU109.4-201ENST00000458953 143 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.14□□□□□ -1.91
LMX1BO60663 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.14□□□□□ -1.91
LMX1BO60663 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.14□□□□□ -1.91
LMX1BO60663 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.14□□□□□ -1.91
LMX1BO60663 LRRC34P2-201ENST00000514850 553 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 RNU6-410P-201ENST00000517006 107 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.14□□□□□ -1.91
LMX1BO60663 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.14□□□□□ -1.91
LMX1BO60663 AP006245.1-201ENST00000522549 120 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AP005435.4-201ENST00000529514 284 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 OR5B10P-201ENST00000532869 642 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.14□□□□□ -1.91
LMX1BO60663 AL133271.1-201ENST00000538229 291 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 ARL2BPP2-201ENST00000550907 489 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AL133153.1-201ENST00000557756 303 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.14□□□□□ -1.91
LMX1BO60663 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.14□□□□□ -1.91
LMX1BO60663 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
LMX1BO60663 AC015917.1-201ENST00000579654 510 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 COX6CP3-201ENST00000580869 223 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 MIR4293-201ENST00000584305 78 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AC006077.1-201ENST00000604746 343 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AC087045.1-201ENST00000605856 382 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 RNU1-30P-201ENST00000606575 163 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AL354950.2-201ENST00000617939 290 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AC243312.2-201ENST00000623340 601 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 AL136313.1-201ENST00000624804 202 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.14□□□□□ -1.91
LMX1BO60663 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.14□□□□□ -1.91
LMX1BO60663 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.14□□□□□ -1.91
LMX1BO60663 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
LMX1BO60663 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.14□□□□□ -1.91
LMX1BO60663 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.14□□□□□ -1.91
LMX1BO60663 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.14□□□□□ -1.91
LMX1BO60663 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 RIOK3P1-201ENST00000418778 1528 ntBASIC3.14□□□□□ -1.91
LMX1BO60663 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
LMX1BO60663 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.13□□□□□ -1.91
LMX1BO60663 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
LMX1BO60663 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
LMX1BO60663 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.13□□□□□ -1.91
LMX1BO60663 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.13□□□□□ -1.91
LMX1BO60663 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
LMX1BO60663 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.13□□□□□ -1.91
LMX1BO60663 RNU4-73P-201ENST00000363164 141 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 U3.11-201ENST00000364476 212 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 SNORD81.2-201ENST00000365153 76 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
LMX1BO60663 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
LMX1BO60663 MTHFD2P2-201ENST00000407725 247 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.13□□□□□ -1.91
LMX1BO60663 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.13□□□□□ -1.91
LMX1BO60663 AC092447.6-201ENST00000414578 210 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AC016831.2-201ENST00000417179 352 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AC018630.2-202ENST00000422992 927 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AL513185.2-201ENST00000425543 193 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AC137499.1-201ENST00000427602 88 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.13□□□□□ -1.91
LMX1BO60663 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.13□□□□□ -1.91
LMX1BO60663 AL049714.1-201ENST00000466686 347 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AL163973.1-201ENST00000484753 577 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 NIPA2P2-201ENST00000496376 1083 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.13□□□□□ -1.91
LMX1BO60663 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.13□□□□□ -1.91
LMX1BO60663 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.13□□□□□ -1.91
LMX1BO60663 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.13□□□□□ -1.91
LMX1BO60663 FGF7P4-201ENST00000509595 295 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AC114797.1-201ENST00000514003 728 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AC112206.3-201ENST00000514578 389 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.13□□□□□ -1.91
LMX1BO60663 SNORA70.14-201ENST00000516205 110 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 RN7SKP234-201ENST00000517173 224 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 OR4R1P-201ENST00000529879 463 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AP000857.1-201ENST00000532151 543 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.13□□□□□ -1.91
LMX1BO60663 AC023050.3-201ENST00000541142 333 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.13□□□□□ -1.91
LMX1BO60663 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms