Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.06□□□□□ -1.92
PCDHGA1Q9Y5H4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
PCDHGA1Q9Y5H4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 RNA5SP126-201ENST00000365092 109 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 Y_RNA.560-201ENST00000384689 102 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 U8.14-201ENST00000390843 143 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AF228730.1-201ENST00000397972 663 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 RNA5SP293-201ENST00000410527 113 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 UBE2FP1-201ENST00000416536 447 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 USP9YP26-201ENST00000421008 661 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 Z99497.1-201ENST00000421282 135 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AL645937.1-202ENST00000421799 937 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AL365184.2-201ENST00000431139 435 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 CETN4P-201ENST00000432407 469 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AL445567.1-201ENST00000439121 144 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 GDI2P2-201ENST00000445131 608 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 ZNF736P5Y-201ENST00000451173 805 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 MTCO1P42-201ENST00000457379 726 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 RPS4XP2-201ENST00000458402 793 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 RPL23AP41-201ENST00000484754 458 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AC055855.1-201ENST00000489563 579 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 RNA5SP356-201ENST00000515972 94 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 RNU6-759P-201ENST00000516740 103 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 RNU6-1003P-201ENST00000517099 105 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 NRON-201ENST00000517270 370 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 WISP1-OT1-201ENST00000602893 642 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 U73023.1-201ENST00000603134 700 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 AC112204.3-201ENST00000623822 332 ntBASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.05□□□□□ -1.92
PCDHGA1Q9Y5H4 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 OR5J1P-201ENST00000313544 939 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 RNU1-75P-201ENST00000347264 129 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 RNU6-805P-201ENST00000365643 106 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 SNORD15B-201ENST00000384714 146 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 MIR19A-201ENST00000384878 82 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 CCNG1P1-201ENST00000406783 885 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 RNU2-33P-201ENST00000410344 192 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 RNA5SP229-201ENST00000410809 99 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 RNU6-920P-201ENST00000410926 92 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 AC078974.1-201ENST00000411597 223 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 OR2B8P-201ENST00000432841 938 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 SETP8-201ENST00000435341 628 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 AL049734.2-201ENST00000441066 616 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 BNIP3P2-201ENST00000441221 577 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 MTCO3P45-201ENST00000443036 613 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 RNU7-59P-201ENST00000459101 61 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 RPS15AP36-201ENST00000492022 382 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 TTC39CP1-201ENST00000512513 755 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 RNU6-928P-201ENST00000516876 104 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 AC009812.2-201ENST00000517657 457 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 MRPS36P5-201ENST00000551909 298 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 AC020895.1-201ENST00000595362 272 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 AL355472.4-201ENST00000610233 626 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 AP003399.1-201ENST00000637534 361 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 AC004972.1-201ENST00000623934 2209 ntBASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PCDHGA1Q9Y5H4 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
PCDHGA1Q9Y5H4 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.03□□□□□ -1.92
PCDHGA1Q9Y5H4 MIR30E-201ENST00000362104 92 ntBASIC3.03□□□□□ -1.92
PCDHGA1Q9Y5H4 Y_RNA.169-201ENST00000363745 96 ntBASIC3.03□□□□□ -1.92
PCDHGA1Q9Y5H4 MIR325-201ENST00000385260 98 ntBASIC3.03□□□□□ -1.92
PCDHGA1Q9Y5H4 RNU6-278P-201ENST00000390945 109 ntBASIC3.03□□□□□ -1.92
PCDHGA1Q9Y5H4 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.03□□□□□ -1.92
PCDHGA1Q9Y5H4 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.03□□□□□ -1.92
PCDHGA1Q9Y5H4 FTH1P1-201ENST00000437933 532 ntBASIC3.03□□□□□ -1.92
PCDHGA1Q9Y5H4 AL714022.1-201ENST00000439897 151 ntBASIC3.03□□□□□ -1.92
PCDHGA1Q9Y5H4 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.03□□□□□ -1.92
PCDHGA1Q9Y5H4 ZNF114P1-201ENST00000453500 292 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms