Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-483P-201ENST00000384088 108 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 RNU2-29P-201ENST00000410423 189 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 JKAMPP1-201ENST00000413804 919 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 USP9YP28-201ENST00000435142 589 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 ELOCP23-201ENST00000452014 332 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 BX510359.1-201ENST00000456973 237 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 RPL21P8-201ENST00000465083 535 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 AL163973.1-201ENST00000484753 577 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 RNA5SP446-201ENST00000515955 82 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 RNU6-685P-201ENST00000517088 95 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 HMGB1P14-201ENST00000557424 591 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 MIR3609-201ENST00000582661 80 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 MIR5684-201ENST00000585074 65 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 AL138889.2-201ENST00000603883 242 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 MIR15A-201ENST00000607334 83 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 SNORD91B-202ENST00000608459 222 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 Z99571.1-201ENST00000636677 394 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 MIR1321-201ENST00000637766 79 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 AC006020.1-201ENST00000420179 1854 ntBASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
CCDC9Q9Y3X0 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 Y_RNA.255-201ENST00000364581 97 ntBASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 RNU6-140P-201ENST00000384566 108 ntBASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 Y_RNA.573-201ENST00000384763 105 ntBASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 MIR301A-201ENST00000385261 86 ntBASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 SNORD66.1-201ENST00000391230 76 ntBASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 MIR1271-201ENST00000408537 86 ntBASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 MTCO1P20-201ENST00000425366 358 ntBASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AL121769.1-201ENST00000469473 401 ntBASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 RPS29P2-201ENST00000479278 136 ntBASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AC098591.2-201ENST00000510152 315 ntBASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 UTP23-205ENST00000520733 369 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AC025627.2-201ENST00000576220 160 ntBASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AC136601.2-201ENST00000604356 474 ntBASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 AC015871.5-202ENST00000623252 701 ntBASIC5.4□□□□□ -1.54
CCDC9Q9Y3X0 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC9Q9Y3X0 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.4□□□□□ -1.55
CCDC9Q9Y3X0 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
CCDC9Q9Y3X0 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC9Q9Y3X0 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC9Q9Y3X0 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 RNY4P14-201ENST00000363656 96 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 SNORA69-201ENST00000383895 132 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 RNU6-116P-201ENST00000384042 109 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 SNORD37.1-201ENST00000390968 65 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 RNU4-46P-201ENST00000410818 138 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 OR6C66P-201ENST00000414917 930 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 MTCYBP8-201ENST00000422855 651 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 RPL36AP53-201ENST00000432891 316 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 SEPT14P3-201ENST00000439401 183 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 RPS26P2-201ENST00000440331 348 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 AL732372.2-207ENST00000445840 183 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 AC003071.1-201ENST00000451219 789 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 SEPT14P2-201ENST00000453405 183 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 CECR9-201ENST00000453421 199 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 FABP5P15-201ENST00000453566 214 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 AC117522.3-201ENST00000507974 584 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 SEPT14P4-201ENST00000513445 186 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 FO082796.1-201ENST00000523795 183 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 MTND4P14-201ENST00000435799 1354 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms