Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 RNU1-108P-201ENST00000362556 161 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 Y_RNA.180-201ENST00000363867 113 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 Y_RNA.396-201ENST00000383949 103 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 FGFR1OP2P1-201ENST00000395943 500 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 AL451074.5-201ENST00000415894 435 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 HMGB1P9-201ENST00000429856 646 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 RPL12P18-201ENST00000437175 325 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 TXNP1-201ENST00000441872 371 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 AL121871.1-201ENST00000443413 436 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 PABPC1P3-201ENST00000469174 459 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 RPS15AP17-201ENST00000470598 390 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 AC104563.1-201ENST00000476147 376 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 RAC1P2-201ENST00000511164 579 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 RN7SKP96-201ENST00000516948 297 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 AC087854.1-201ENST00000519706 414 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 OR4T1P-201ENST00000554933 911 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 SUB1P2-201ENST00000556401 297 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 MIR5004-201ENST00000579078 107 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 BDH2P1-201ENST00000602288 736 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 RPL12P50-201ENST00000603116 116 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 AC078899.5-201ENST00000612475 178 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 AC134882.1-201ENST00000603738 1676 ntBASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
COL17A1Q9UMD9 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 SNORA48.8-201ENST00000391324 134 ntBASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 MIR1252-201ENST00000408861 65 ntBASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 AC048351.1-201ENST00000420064 602 ntBASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 AC243428.1-201ENST00000421099 264 ntBASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 AL589872.1-201ENST00000426602 288 ntBASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 UBA52P3-201ENST00000491303 382 ntBASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 AC093663.1-201ENST00000497190 394 ntBASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 AC091885.1-201ENST00000506658 268 ntBASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 CYP4A43P-201ENST00000568156 121 ntBASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL17A1Q9UMD9 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL17A1Q9UMD9 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 Y_RNA.515-201ENST00000384535 112 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 RNU6-831P-201ENST00000384548 107 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 OR51AB1P-201ENST00000429046 620 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 AC025750.2-201ENST00000442609 450 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 AL035551.1-201ENST00000446931 348 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 AC006511.1-201ENST00000470614 315 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 MED28P2-201ENST00000475771 317 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 AC034222.1-201ENST00000494052 532 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 RNU6-408P-201ENST00000515910 100 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 HMGB1P19-201ENST00000517578 577 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 AL389895.1-201ENST00000554127 252 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 AC024614.2-201ENST00000577584 372 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 AC006363.1-201ENST00000603806 463 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 AC004805.2-201ENST00000605382 482 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 uc_338.15-201ENST00000615470 191 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 AC007485.1-201ENST00000616755 206 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 AL732618.1-201ENST00000623251 301 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 FER-202ENST00000438717 1531 ntTSL 2 BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 RPL7P26-201ENST00000333817 754 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 Y_RNA.5-201ENST00000362334 102 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 Y_RNA.150-201ENST00000363562 102 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 RNU1-39P-201ENST00000383897 165 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 SNORD17-201ENST00000390930 237 ntBASIC5.64□□□□□ -1.51
COL17A1Q9UMD9 SAR1AP2-201ENST00000392696 594 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms