Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SNORD19B-201ENST00000459623 84 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RN7SL98P-201ENST00000462271 300 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RN7SL585P-201ENST00000470538 280 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RN7SL459P-201ENST00000481078 302 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 VN1R105P-201ENST00000486595 910 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AC083904.1-201ENST00000487828 231 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 MLLT10P2-201ENST00000506434 249 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RBBP4P6-201ENST00000508098 202 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AC017037.1-201ENST00000508460 471 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RNU6-123P-201ENST00000516163 102 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 MIR2114-201ENST00000516645 80 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RANP9-201ENST00000519957 271 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AC020914.4-201ENST00000597690 277 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 MIR7702-201ENST00000621931 59 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AC012618.3-205ENST00000637896 1496 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 RNA5SP388-201ENST00000362584 119 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.58-201ENST00000362807 102 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.154-201ENST00000363624 102 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 RNY3P1-201ENST00000365085 102 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 RNY3-201ENST00000365484 102 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 RNU6-1181P-201ENST00000384191 106 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.490-201ENST00000384413 102 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AL360182.1-201ENST00000397433 468 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 MIR1290-201ENST00000408735 78 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 VN1R36P-201ENST00000414936 291 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AL354751.2-201ENST00000415471 210 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AF228730.4-201ENST00000421457 183 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AL157831.1-201ENST00000426134 473 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AL732292.1-201ENST00000426692 226 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 MTCO2P12-201ENST00000427426 682 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AC024082.2-201ENST00000434771 238 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 RPL23AP52-201ENST00000439311 478 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 RPL23AP89-201ENST00000439324 255 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 PHBP16-201ENST00000446318 950 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 RPS15AP27-201ENST00000449183 343 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 CEACAMP4-201ENST00000457676 421 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AC087588.1-201ENST00000462203 316 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AC110792.1-201ENST00000491826 472 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 RN7SL810P-201ENST00000493031 276 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 RNU6-927P-201ENST00000516199 100 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.689-201ENST00000516589 107 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 RN7SKP92-201ENST00000517266 244 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AP001804.3-201ENST00000525146 880 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 CYCSP27-201ENST00000527643 293 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AL355836.1-201ENST00000555951 870 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AC007151.1-201ENST00000572774 483 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AC008745.1-201ENST00000604064 271 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 CYP2C61P-201ENST00000604072 290 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AP001330.4-201ENST00000604350 154 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AC064801.1-201ENST00000612025 407 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 AC008013.2-202ENST00000637965 364 ntBASIC3.79□□□□□ -1.8
VSX1Q9NZR4 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
VSX1Q9NZR4 LARP1BP1-201ENST00000506036 1359 ntBASIC3.78□□□□□ -1.8
VSX1Q9NZR4 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.78□□□□□ -1.8
VSX1Q9NZR4 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.78□□□□□ -1.8
VSX1Q9NZR4 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
VSX1Q9NZR4 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
VSX1Q9NZR4 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.78□□□□□ -1.8
VSX1Q9NZR4 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.78□□□□□ -1.8
VSX1Q9NZR4 RNU6-254P-201ENST00000363377 107 ntBASIC3.78□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.339-201ENST00000365325 102 ntBASIC3.78□□□□□ -1.8
VSX1Q9NZR4 RNU6-128P-201ENST00000383976 107 ntBASIC3.78□□□□□ -1.8
VSX1Q9NZR4 SNORA36C-201ENST00000384289 132 ntBASIC3.78□□□□□ -1.8
VSX1Q9NZR4 RNU6-692P-201ENST00000384496 107 ntBASIC3.78□□□□□ -1.8
VSX1Q9NZR4 SNORD70.1-201ENST00000391007 85 ntBASIC3.78□□□□□ -1.8
VSX1Q9NZR4 MIR937-201ENST00000401271 86 ntBASIC3.78□□□□□ -1.8
VSX1Q9NZR4 MIR548K-201ENST00000408406 116 ntBASIC3.78□□□□□ -1.8
VSX1Q9NZR4 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.78□□□□□ -1.8
VSX1Q9NZR4 AL513331.1-201ENST00000411908 397 ntBASIC3.78□□□□□ -1.8
VSX1Q9NZR4 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms