Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 Y_RNA.480-201ENST00000384364 102 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 RNU1-44P-201ENST00000384453 163 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 Y_RNA.534-201ENST00000384599 112 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 RN7SKP177-201ENST00000410567 355 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 RNA5SP104-201ENST00000410989 118 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 RN7SKP167-201ENST00000411047 285 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 SAR1AP4-201ENST00000429225 591 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 RPL23AP89-201ENST00000439324 255 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 Y_RNA.635-201ENST00000459041 101 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 SNORA70.16-201ENST00000516390 95 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 RPL23AP97-201ENST00000568955 471 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 MIR3942-201ENST00000585264 109 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 AC098826.3-201ENST00000603823 466 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 AL160290.3-201ENST00000604869 165 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 AC140479.6-201ENST00000633535 357 ntBASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM39Q9HCM9 Y_RNA.58-201ENST00000362807 102 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 RNU1-20P-201ENST00000363314 162 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 RNU6-254P-201ENST00000363377 107 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 Y_RNA.154-201ENST00000363624 102 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 RNA5SP175-201ENST00000364275 119 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 RNU6-512P-201ENST00000364438 103 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 RNY3P1-201ENST00000365085 102 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 RNY3-201ENST00000365484 102 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 RNU6-741P-201ENST00000383889 107 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 Y_RNA.490-201ENST00000384413 102 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 MIR450B-201ENST00000401182 78 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 RPS4XP7-201ENST00000406274 780 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AC063979.1-201ENST00000415539 377 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 CYP4F29P-201ENST00000420685 446 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AL592045.1-201ENST00000429867 352 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 RPS23P7-201ENST00000466210 444 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AP000926.1-201ENST00000479573 241 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 TBCAP3-201ENST00000512475 312 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 Y_RNA.682-201ENST00000516457 100 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 Z98200.1-201ENST00000607298 470 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AL021997.2-201ENST00000615674 271 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AL160413.1-201ENST00000622780 310 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AL133216.2-202ENST00000634512 349 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 Z99571.1-201ENST00000636677 394 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AC016588.2-201ENST00000632484 3021 ntBASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.31□□□□□ -1.72
TRIM39Q9HCM9 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 ZNF285B-201ENST00000561698 1767 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 RPS4XP5-202ENST00000449995 1334 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 Y_RNA.212-201ENST00000364177 102 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 AL356057.2-201ENST00000403318 432 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 AC074085.1-201ENST00000413598 418 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 RPL21P109-201ENST00000422213 475 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 AC091390.3-201ENST00000426478 338 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 C4BPAP2-201ENST00000428434 478 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 AC005019.1-201ENST00000436455 431 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 RPL35AP15-201ENST00000468042 339 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 AC068587.1-201ENST00000483613 781 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 RNU6-566P-201ENST00000516790 107 ntBASIC4.3□□□□□ -1.72
TRIM39Q9HCM9 RNA5SP471-201ENST00000516971 106 ntBASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms