Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC2.76□□□□□ -1.97
LIME1Q9H400 AC055876.1-202ENST00000567053 138 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC2.76□□□□□ -1.97
LIME1Q9H400 AC005951.2-201ENST00000576282 495 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.76□□□□□ -1.97
LIME1Q9H400 AC239868.4-201ENST00000608318 671 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
LIME1Q9H400 AC100793.4-201ENST00000613683 429 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 PLCE1P1-201ENST00000622094 305 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 AC091953.2-201ENST00000623979 160 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.76□□□□□ -1.97
LIME1Q9H400 AC091152.2-201ENST00000591628 2569 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 AL390237.1-201ENST00000404226 1415 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 AC092104.1-201ENST00000497346 1441 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
LIME1Q9H400 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.76□□□□□ -1.97
LIME1Q9H400 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.76□□□□□ -1.97
LIME1Q9H400 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
LIME1Q9H400 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
LIME1Q9H400 OR5J1P-201ENST00000313544 939 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
LIME1Q9H400 RNU5A-1-201ENST00000362698 116 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 U3.11-201ENST00000364476 212 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
LIME1Q9H400 MIR493-201ENST00000385254 89 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AL591034.1-201ENST00000407447 340 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 RNU6-248P-201ENST00000410720 107 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 RNA5SP229-201ENST00000410809 99 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.75□□□□□ -1.97
LIME1Q9H400 UBE2FP1-201ENST00000416536 447 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 SEPT2P1-201ENST00000419651 180 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.75□□□□□ -1.97
LIME1Q9H400 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.75□□□□□ -1.97
LIME1Q9H400 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.75□□□□□ -1.97
LIME1Q9H400 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.75□□□□□ -1.97
LIME1Q9H400 ATP5C1P1-201ENST00000441945 895 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AL022238.1-201ENST00000442557 355 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 MTND6P13-201ENST00000443510 523 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AC016696.1-201ENST00000446949 318 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 ELOCP30-201ENST00000447108 299 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 MTND1P29-201ENST00000448112 647 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 RN7SL432P-201ENST00000484057 298 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.75□□□□□ -1.97
LIME1Q9H400 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
LIME1Q9H400 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC2.75□□□□□ -1.97
LIME1Q9H400 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.75□□□□□ -1.97
LIME1Q9H400 AC117532.1-201ENST00000514638 323 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 RNA5SP356-201ENST00000515972 94 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 RNU6-64P-201ENST00000517119 105 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.75□□□□□ -1.97
LIME1Q9H400 AC093331.1-201ENST00000521474 169 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.75□□□□□ -1.97
LIME1Q9H400 RPL21P5-201ENST00000554662 472 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 OR4H12P-201ENST00000556269 907 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.75□□□□□ -1.97
LIME1Q9H400 AC015917.1-201ENST00000579654 510 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 MIR3118-1-201ENST00000581787 76 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AC009977.1-201ENST00000586015 570 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AC104984.5-201ENST00000586878 94 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 NBR2-204ENST00000587322 63 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 HMGN1P30-201ENST00000589286 268 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.75□□□□□ -1.97
LIME1Q9H400 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.75□□□□□ -1.97
LIME1Q9H400 KC877982.1-201ENST00000602313 470 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AL358072.1-201ENST00000604156 575 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 RNU6-87P-201ENST00000607561 108 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AC093783.1-201ENST00000612976 329 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AC009090.3-201ENST00000616553 565 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 SNORD39.4-201ENST00000620099 78 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.75□□□□□ -1.97
LIME1Q9H400 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.75□□□□□ -1.97
LIME1Q9H400 AP003399.1-201ENST00000637534 361 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 AC010149.2-201ENST00000637608 315 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
LIME1Q9H400 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
LIME1Q9H400 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
LIME1Q9H400 AC008568.2-201ENST00000623862 2313 ntBASIC2.75□□□□□ -1.97
LIME1Q9H400 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
LIME1Q9H400 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
LIME1Q9H400 ZNF826P-207ENST00000622273 1910 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
LIME1Q9H400 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
LIME1Q9H400 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
LIME1Q9H400 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
LIME1Q9H400 FTLP6-201ENST00000355274 422 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
LIME1Q9H400 RNU6-511P-201ENST00000363496 107 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 U3.6-201ENST00000363622 211 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
LIME1Q9H400 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.74□□□□□ -1.97
LIME1Q9H400 RNU1-39P-201ENST00000383897 165 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 RNU6-297P-201ENST00000384636 107 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 MIR591-201ENST00000385290 95 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
LIME1Q9H400 AL359634.1-202ENST00000404721 284 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
LIME1Q9H400 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.74□□□□□ -1.97
LIME1Q9H400 AC018630.2-202ENST00000422992 927 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.74□□□□□ -1.97
LIME1Q9H400 AC008850.1-201ENST00000427546 362 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms