Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AL162274.2-201ENST00000614406 332 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AC010133.1-201ENST00000615809 842 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 MIR6733-201ENST00000635723 61 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AC103706.2-201ENST00000638080 240 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VPS39Q96JC1 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.79□□□□□ -1.96
VPS39Q96JC1 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.79□□□□□ -1.96
VPS39Q96JC1 RNA5SP387-201ENST00000364226 106 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 SNORA48.5-201ENST00000391143 135 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 MIR888-201ENST00000401186 77 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 TXNP7-201ENST00000406296 293 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
VPS39Q96JC1 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS39Q96JC1 HMGN2P35-201ENST00000412164 270 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC2.79□□□□□ -1.96
VPS39Q96JC1 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.79□□□□□ -1.96
VPS39Q96JC1 MTND1P20-201ENST00000430341 950 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC2.79□□□□□ -1.96
VPS39Q96JC1 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS39Q96JC1 NANOGNBP1-201ENST00000448444 480 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 RN7SL297P-201ENST00000483161 293 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 EIF4EP3-201ENST00000498782 656 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
VPS39Q96JC1 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
VPS39Q96JC1 AC091826.1-201ENST00000514065 313 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 RNA5SP341-201ENST00000516261 117 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 UBTFL10-201ENST00000528532 562 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.79□□□□□ -1.96
VPS39Q96JC1 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.79□□□□□ -1.96
VPS39Q96JC1 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.79□□□□□ -1.96
VPS39Q96JC1 AL133271.1-201ENST00000538229 291 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 MIR4325-201ENST00000583049 90 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 MIR3616-201ENST00000584070 92 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 AC023043.3-201ENST00000593113 385 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 VN1R90P-201ENST00000595717 726 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 AC022022.2-201ENST00000602989 360 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 AL353778.1-201ENST00000603149 408 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 MTND4LP5-201ENST00000605152 292 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 AL139344.1-201ENST00000605228 195 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
VPS39Q96JC1 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.79□□□□□ -1.96
VPS39Q96JC1 AC021755.4-201ENST00000616620 456 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 AP002791.1-201ENST00000623291 381 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 AL137003.2-201ENST00000606924 2538 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 AC092447.10-201ENST00000620607 1652 ntBASIC2.79□□□□□ -1.96
VPS39Q96JC1 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
VPS39Q96JC1 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC011477.1-204ENST00000623416 1325 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 RNU6-223P-201ENST00000362830 107 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 RNU6-931P-201ENST00000363850 107 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 RNU1-140P-201ENST00000365040 165 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 Y_RNA.333-201ENST00000365274 102 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 RNU6-744P-201ENST00000365557 107 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 RNU6-1316P-201ENST00000384242 108 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 AL590084.2-201ENST00000401481 382 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 AL096701.2-201ENST00000416920 238 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 AL451054.2-201ENST00000420896 202 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC010099.3-201ENST00000423896 409 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 RPL35AP22-201ENST00000436855 335 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 RPL26P9-201ENST00000457466 433 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC107626.1-201ENST00000471084 183 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 RPL9P33-201ENST00000484311 566 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC026427.2-201ENST00000506228 536 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC023050.2-201ENST00000544968 387 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 MIR4999-201ENST00000585029 91 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC024153.1-201ENST00000603103 365 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC135507.1-201ENST00000607214 561 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 ATP5A1P2-202ENST00000616464 443 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 AC017037.3-201ENST00000625016 472 ntBASIC2.78□□□□□ -1.96
VPS39Q96JC1 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
VPS39Q96JC1 RNU6-884P-201ENST00000363889 107 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS39Q96JC1 RPS15AP5-201ENST00000436276 388 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS39Q96JC1 AC104389.3-201ENST00000445629 235 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 MRPL50P4-201ENST00000446432 475 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 RPL23AP35-201ENST00000451906 501 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 GSTA11P-201ENST00000452866 669 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 USP9YP10-201ENST00000454868 628 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS39Q96JC1 RPL12P25-201ENST00000455592 494 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 ANKRD26P4-201ENST00000455755 950 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 RPS29P26-201ENST00000477483 171 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 128.4 ms