Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC008162.1-201ENST00000604718 254 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AL670379.1-201ENST00000604752 252 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AL670379.5-201ENST00000605253 252 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AL670379.12-201ENST00000605291 253 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AL670379.8-201ENST00000605353 252 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AL670379.7-201ENST00000605823 252 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AC084781.2-201ENST00000615568 161 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AL359757.2-201ENST00000624309 274 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AC048347.1-201ENST00000624621 427 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 GABPAP-201ENST00000419271 1356 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 MTCO1P12-201ENST00000414273 1543 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 EXOC5P1-201ENST00000510543 1969 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 RNU6-1309P-201ENST00000363305 108 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 RNU1-20P-201ENST00000363314 162 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 RN7SKP227-201ENST00000364445 330 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 Y_RNA.339-201ENST00000365325 102 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 RNU6-196P-201ENST00000384315 107 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 RNU6-1297P-201ENST00000384415 104 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 MIR558-201ENST00000384920 94 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 RNY4P36-201ENST00000391116 96 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 RNU6-193P-201ENST00000410977 107 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 HMGB1P12-201ENST00000438594 598 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AL590639.1-201ENST00000456484 337 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 FTH1P2-201ENST00000466086 412 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 RN7SL432P-201ENST00000484057 298 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AC104164.2-201ENST00000496953 495 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 FAM206BP-201ENST00000510179 541 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 SNORD27.1-201ENST00000516319 72 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 SNORA70.16-201ENST00000516390 95 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 RNU6-1092P-201ENST00000516955 87 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 HMGB1P41-201ENST00000520234 440 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AC007823.1-201ENST00000569932 1566 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AC005951.2-201ENST00000576282 495 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 DPPA3P3-201ENST00000603842 430 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AC011373.1-201ENST00000607270 237 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AC019193.3-201ENST00000609144 554 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AL031666.3-201ENST00000609320 1006 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 MIR6716-201ENST00000613413 80 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AC114781.5-201ENST00000615297 108 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 MIR7154-201ENST00000620673 73 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 OR52H1-202ENST00000641796 1061 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 HSPA8P1-201ENST00000425843 1833 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 CPHL1P-201ENST00000461341 3407 ntBASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLIP3Q96DZ5 AL133383.2-201ENST00000622958 2336 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 RNU6-522P-201ENST00000364497 107 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 MIR514A1-201ENST00000385133 98 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 NUP35P1-201ENST00000422734 947 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 MED13P1-201ENST00000428342 171 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 RPS26P2-201ENST00000440331 348 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 RPL23AP43-201ENST00000446445 471 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 RNU6-1208P-201ENST00000459588 107 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 RN7SL98P-201ENST00000462271 300 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AC103987.1-201ENST00000473394 348 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 VN1R105P-201ENST00000486595 910 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AL049874.1-201ENST00000489560 388 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AC025445.1-201ENST00000502728 300 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AC017037.1-201ENST00000508460 471 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 RNU6-123P-201ENST00000516163 102 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 SNORA31.9-201ENST00000516429 84 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 MIR2114-201ENST00000516645 80 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 RNU6-1137P-201ENST00000517073 99 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 COX6CP5-201ENST00000527162 228 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms