Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 RNU6-433P-201ENST00000363216 104 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 DEFA7P-201ENST00000382676 285 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AL356057.3-201ENST00000402607 340 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AL359704.1-201ENST00000411586 781 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 MTCO2P21-201ENST00000419780 677 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 MTND1P32-201ENST00000433043 938 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 CR769776.1-201ENST00000441254 787 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 ZNF736P11Y-201ENST00000442535 1213 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 MTCO3P45-201ENST00000443036 613 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 ZNF736P12Y-201ENST00000443152 1243 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 MTCYBP3-201ENST00000445588 1137 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AC138853.1-201ENST00000503549 823 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 CDC42P4-201ENST00000510507 563 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 SNORA31.15-201ENST00000516771 132 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 RNA5SP291-201ENST00000517222 105 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AC005000.2-201ENST00000605468 310 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AC024560.3-201ENST00000608482 349 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AC072039.2-201ENST00000608883 439 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AL139418.1-201ENST00000613613 177 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 SNHG22-203ENST00000617833 660 ntBASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC40Q4G0X9 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 FAM133CP-201ENST00000332869 704 ntBASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 Z92545.1-201ENST00000411782 234 ntBASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 FAM103A2P-201ENST00000444122 354 ntBASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 TPT1P8-201ENST00000510120 555 ntBASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 RNU6-311P-201ENST00000516224 102 ntBASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 RPPH1-2P-201ENST00000516688 293 ntBASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 AL391261.3-201ENST00000557194 520 ntBASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 AL133153.1-201ENST00000557756 303 ntBASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 AP000676.3-201ENST00000623299 569 ntBASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 AC112204.3-201ENST00000623822 332 ntBASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 ZNF876P-202ENST00000398732 1485 ntBASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 CR848007.1-201ENST00000442354 1699 ntBASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
CCDC40Q4G0X9 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 RPL21P132-201ENST00000331267 462 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 FTLP6-201ENST00000355274 422 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 RNU6-931P-201ENST00000363850 107 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 SET-203ENST00000372688 801 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 MIR1305-201ENST00000408300 86 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 USP9YP20-201ENST00000419224 558 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 ZNF863P-201ENST00000426746 417 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC092427.1-202ENST00000430569 476 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC105272.1-201ENST00000438604 198 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 RPS15AP27-201ENST00000449183 343 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC008481.1-201ENST00000463278 396 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms