Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 uc_338.1-201ENST00000612113 180 ntBASIC3.47□□□□□ -1.85
USP41Q3LFD5 Z99129.1-201ENST00000612510 255 ntBASIC3.47□□□□□ -1.85
USP41Q3LFD5 AC091834.1-201ENST00000614543 472 ntBASIC3.47□□□□□ -1.85
USP41Q3LFD5 uc_338.12-201ENST00000616344 181 ntBASIC3.47□□□□□ -1.85
USP41Q3LFD5 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.47□□□□□ -1.85
USP41Q3LFD5 AC018692.3-201ENST00000623929 123 ntBASIC3.47□□□□□ -1.85
USP41Q3LFD5 SCARNA15.3-201ENST00000626315 122 ntBASIC3.47□□□□□ -1.85
USP41Q3LFD5 SCARNA4.1-201ENST00000628597 123 ntBASIC3.47□□□□□ -1.85
USP41Q3LFD5 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.47□□□□□ -1.85
USP41Q3LFD5 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.47□□□□□ -1.85
USP41Q3LFD5 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
USP41Q3LFD5 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.47□□□□□ -1.85
USP41Q3LFD5 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
USP41Q3LFD5 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.85
USP41Q3LFD5 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.46□□□□□ -1.85
USP41Q3LFD5 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
USP41Q3LFD5 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
USP41Q3LFD5 RNU6-50P-201ENST00000362356 103 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 RNU1-70P-201ENST00000362618 164 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 RNU1-39P-201ENST00000383897 165 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 Y_RNA.517-201ENST00000384551 106 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 RPL21P24-201ENST00000413752 448 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 USP9YP36-201ENST00000424581 829 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 AC104850.1-201ENST00000435940 476 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 AL662791.1-201ENST00000441992 928 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 SNORA59A-201ENST00000459326 152 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 AC008481.1-201ENST00000463278 396 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 AP001486.1-201ENST00000463339 476 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 AL049873.1-201ENST00000480540 376 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 RPS3AP14-201ENST00000483907 780 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 AC011825.1-201ENST00000484967 388 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 AC114967.1-201ENST00000504890 259 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 RNU6-390P-201ENST00000516259 103 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 RNU1-103P-201ENST00000516502 125 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 RNA5SP337-201ENST00000517007 109 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 AC068657.1-201ENST00000520807 306 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
USP41Q3LFD5 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 AL451007.1-201ENST00000595491 289 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 AC138915.3-201ENST00000562908 1389 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 AL672296.1-201ENST00000427780 2158 ntBASIC3.46□□□□□ -1.86
USP41Q3LFD5 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
USP41Q3LFD5 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.46□□□□□ -1.86
USP41Q3LFD5 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
USP41Q3LFD5 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
USP41Q3LFD5 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
USP41Q3LFD5 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
USP41Q3LFD5 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
USP41Q3LFD5 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.45□□□□□ -1.86
USP41Q3LFD5 RNU5A-1-201ENST00000362698 116 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 RNU4-1-201ENST00000363925 141 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
USP41Q3LFD5 U3.26-201ENST00000391236 204 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 AL138885.1-201ENST00000405921 675 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 AL356968.1-201ENST00000416622 474 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 RPL31P35-201ENST00000431058 377 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 AC093156.1-201ENST00000440382 670 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.45□□□□□ -1.86
USP41Q3LFD5 MTCO3P45-201ENST00000443036 613 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 MTND1P12-201ENST00000455231 147 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.45□□□□□ -1.86
USP41Q3LFD5 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
USP41Q3LFD5 LAMTOR3P2-201ENST00000504479 232 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 RNA5SP468-201ENST00000516782 93 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 RNU6-430P-201ENST00000517078 107 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.45□□□□□ -1.86
USP41Q3LFD5 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.45□□□□□ -1.86
USP41Q3LFD5 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.45□□□□□ -1.86
USP41Q3LFD5 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.45□□□□□ -1.86
USP41Q3LFD5 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.45□□□□□ -1.86
USP41Q3LFD5 NRBF2P1-201ENST00000587407 859 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.45□□□□□ -1.86
USP41Q3LFD5 AL161729.4-201ENST00000604650 476 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 AC072046.2-201ENST00000618366 268 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 AC098679.4-201ENST00000624241 654 ntBASIC3.45□□□□□ -1.86
USP41Q3LFD5 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
USP41Q3LFD5 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
USP41Q3LFD5 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.45□□□□□ -1.86
USP41Q3LFD5 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.45□□□□□ -1.86
USP41Q3LFD5 PWAR6-201ENST00000552334 4618 ntBASIC3.44□□□□□ -1.86
USP41Q3LFD5 AC091152.2-201ENST00000591628 2569 ntBASIC3.44□□□□□ -1.86
USP41Q3LFD5 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.44□□□□□ -1.86
USP41Q3LFD5 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.44□□□□□ -1.86
USP41Q3LFD5 DEFB108F-201ENST00000344638 222 ntBASIC3.44□□□□□ -1.86
USP41Q3LFD5 AC110754.1-201ENST00000399740 601 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms