Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MIR513A1-201ENST00000385138 129 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 MIR320B1-201ENST00000390209 79 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 RN7SKP200-201ENST00000410564 320 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC1.01□□□□□ -2.25
CHD9Q3L8U1 AC109635.4-202ENST00000531666 412 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 AC125611.2-201ENST00000551907 647 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 SNORD114-21-201ENST00000606412 72 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC1.01□□□□□ -2.25
CHD9Q3L8U1 AL133370.2-201ENST00000619934 439 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 CENPCP1-201ENST00000533085 2578 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC1□□□□□ -2.25
CHD9Q3L8U1 SNORD114-23-201ENST00000363536 72 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1□□□□□ -2.25
CHD9Q3L8U1 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1□□□□□ -2.25
CHD9Q3L8U1 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1□□□□□ -2.25
CHD9Q3L8U1 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC1□□□□□ -2.25
CHD9Q3L8U1 OR6K5P-201ENST00000447050 945 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC1□□□□□ -2.25
CHD9Q3L8U1 PCNAP1-202ENST00000595299 752 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 AC009220.3-201ENST00000604318 586 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 AC015849.6-201ENST00000605454 474 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 AC090425.2-201ENST00000608818 501 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 XIST_intron.1-201ENST00000619444 68 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 AC011330.2-201ENST00000621680 635 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC1□□□□□ -2.25
CHD9Q3L8U1 RPL31P63-201ENST00000422565 375 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 RAB9AP5-201ENST00000437794 597 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 RAB9AP2-201ENST00000443911 597 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1□□□□□ -2.25
CHD9Q3L8U1 AC090517.3-201ENST00000625170 141 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1□□□□□ -2.25
CHD9Q3L8U1 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
CHD9Q3L8U1 AC103710.2-202ENST00000641454 2853 ntBASIC1□□□□□ -2.25
CHD9Q3L8U1 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
CHD9Q3L8U1 SNORD56.5-201ENST00000364281 72 ntBASIC0.99□□□□□ -2.25
CHD9Q3L8U1 RNU6-317P-201ENST00000384031 107 ntBASIC0.99□□□□□ -2.25
CHD9Q3L8U1 TATDN1P1-201ENST00000414123 891 ntBASIC0.99□□□□□ -2.25
CHD9Q3L8U1 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC0.99□□□□□ -2.25
CHD9Q3L8U1 AC008962.1-201ENST00000605729 304 ntBASIC0.99□□□□□ -2.25
CHD9Q3L8U1 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC0.99□□□□□ -2.25
CHD9Q3L8U1 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC0.99□□□□□ -2.25
CHD9Q3L8U1 AP003072.4-201ENST00000624580 310 ntBASIC0.99□□□□□ -2.25
CHD9Q3L8U1 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC0.99□□□□□ -2.25
CHD9Q3L8U1 AC096533.1-201ENST00000411645 353 ntBASIC0.99□□□□□ -2.25
CHD9Q3L8U1 AL591704.2-201ENST00000421658 181 ntBASIC0.99□□□□□ -2.25
CHD9Q3L8U1 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC0.99□□□□□ -2.25
CHD9Q3L8U1 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC0.99□□□□□ -2.25
CHD9Q3L8U1 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC0.99□□□□□ -2.25
CHD9Q3L8U1 HMGB1P46-201ENST00000520062 610 ntBASIC0.99□□□□□ -2.25
CHD9Q3L8U1 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC0.99□□□□□ -2.25
CHD9Q3L8U1 MIR4711-201ENST00000578274 70 ntBASIC0.99□□□□□ -2.25
CHD9Q3L8U1 AC009229.3-201ENST00000608056 282 ntBASIC0.99□□□□□ -2.25
CHD9Q3L8U1 Y_RNA.62-201ENST00000362840 99 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 RNU6-198P-201ENST00000384258 104 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 MIR1250-201ENST00000408098 113 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AC092447.6-201ENST00000414578 210 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AC234064.1-201ENST00000436312 247 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AL121871.1-201ENST00000443413 436 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 RPL21P104-201ENST00000464143 478 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AC108157.1-201ENST00000510511 539 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AC012443.1-201ENST00000605605 231 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 SNORA1.3-201ENST00000384676 136 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AC090616.5-202ENST00000582111 297 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AL031775.1-201ENST00000607014 887 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 MIR4496-201ENST00000635896 61 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 RNA5SP193-201ENST00000410353 107 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 RPL21P90-201ENST00000415692 466 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 Z96811.1-201ENST00000445880 108 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AL035407.2-201ENST00000454090 378 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AC239860.2-201ENST00000525886 270 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AP003072.2-201ENST00000527756 676 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 MIR3690-201ENST00000580266 75 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 DUXAP4-201ENST00000603046 613 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 AL590095.2-201ENST00000604136 117 ntBASIC0.98□□□□□ -2.25
CHD9Q3L8U1 Y_RNA.85-201ENST00000363014 111 ntBASIC0.97□□□□□ -2.25
CHD9Q3L8U1 AC023347.2-201ENST00000433994 462 ntBASIC0.97□□□□□ -2.25
CHD9Q3L8U1 AC010285.1-201ENST00000470580 392 ntBASIC0.97□□□□□ -2.25
CHD9Q3L8U1 RPL21P131-201ENST00000497298 483 ntBASIC0.97□□□□□ -2.25
CHD9Q3L8U1 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC0.97□□□□□ -2.25
CHD9Q3L8U1 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC0.97□□□□□ -2.25
CHD9Q3L8U1 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC0.97□□□□□ -2.25
CHD9Q3L8U1 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC0.97□□□□□ -2.25
CHD9Q3L8U1 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC0.97□□□□□ -2.25
CHD9Q3L8U1 ICE2P2-201ENST00000483823 2787 ntBASIC0.97□□□□□ -2.25
CHD9Q3L8U1 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms