Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 AC044860.2-201ENST00000561005 179 ntBASIC4.79□□□□□ -1.64
PCDH1Q08174 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH1Q08174 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.79□□□□□ -1.64
PCDH1Q08174 MIR1273C-201ENST00000578669 77 ntBASIC4.79□□□□□ -1.64
PCDH1Q08174 AC107294.1-201ENST00000609524 467 ntBASIC4.79□□□□□ -1.64
PCDH1Q08174 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH1Q08174 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
PCDH1Q08174 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
PCDH1Q08174 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.79□□□□□ -1.64
PCDH1Q08174 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH1Q08174 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH1Q08174 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH1Q08174 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.79□□□□□ -1.64
PCDH1Q08174 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH1Q08174 AL450326.2-201ENST00000421913 1962 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.78□□□□□ -1.64
PCDH1Q08174 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
PCDH1Q08174 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
PCDH1Q08174 Y_RNA.117-201ENST00000363294 101 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 RNU6-512P-201ENST00000364438 103 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 RNU6-395P-201ENST00000365662 106 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
PCDH1Q08174 RNU6-1074P-201ENST00000383995 104 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 Y_RNA.478-201ENST00000384358 107 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 SNORA70-201ENST00000384436 135 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 MIR628-201ENST00000385229 95 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 SPTLC1P2-201ENST00000407089 121 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 U3.42-201ENST00000408746 214 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 AC139712.2-201ENST00000424302 339 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 AC092423.1-201ENST00000430165 186 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 AL132765.1-201ENST00000434165 553 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.78□□□□□ -1.64
PCDH1Q08174 AC133134.1-201ENST00000466800 359 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 RPL12P20-201ENST00000475538 479 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 HMGN1P11-201ENST00000508668 303 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.78□□□□□ -1.64
PCDH1Q08174 Y_RNA.673-201ENST00000516306 88 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 RNA5SP471-201ENST00000516971 106 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 RNU6-570P-201ENST00000517051 105 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 IGKV2D-23-201ENST00000518179 286 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 AC109329.1-201ENST00000518744 317 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
PCDH1Q08174 AC092490.3-201ENST00000545370 572 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 AL157871.3-201ENST00000557231 293 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 AC006116.3-201ENST00000592968 361 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 AL512605.2-201ENST00000592972 256 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 SDR42E1P4-201ENST00000620894 481 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 CR381572.2-201ENST00000624852 397 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 ZNF299P-201ENST00000406845 1804 ntBASIC4.78□□□□□ -1.64
PCDH1Q08174 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
PCDH1Q08174 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
PCDH1Q08174 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
PCDH1Q08174 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
PCDH1Q08174 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.78□□□□□ -1.64
PCDH1Q08174 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH1Q08174 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH1Q08174 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH1Q08174 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH1Q08174 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH1Q08174 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
PCDH1Q08174 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.77□□□□□ -1.65
PCDH1Q08174 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.77□□□□□ -1.65
PCDH1Q08174 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
PCDH1Q08174 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH1Q08174 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH1Q08174 RPL9P7-201ENST00000330965 580 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 U8.4-201ENST00000363626 134 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 RNU6-1317P-201ENST00000364582 104 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 RNA5SP428-201ENST00000365129 132 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 AL096701.2-201ENST00000416920 238 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 AC007098.1-201ENST00000420122 367 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.77□□□□□ -1.65
PCDH1Q08174 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC4.77□□□□□ -1.65
PCDH1Q08174 RPL21P91-201ENST00000429231 479 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 AC092573.2-201ENST00000434546 243 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 AL513043.1-201ENST00000439124 535 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.77□□□□□ -1.65
PCDH1Q08174 RPL9P9-202ENST00000466501 579 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 AC005532.2-201ENST00000467154 373 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.77□□□□□ -1.65
PCDH1Q08174 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
PCDH1Q08174 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.77□□□□□ -1.65
PCDH1Q08174 HMGB1P35-201ENST00000503360 598 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 AC025465.3-201ENST00000510570 311 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 RNU6-911P-201ENST00000516523 104 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.77□□□□□ -1.65
PCDH1Q08174 AP003733.2-201ENST00000529409 171 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH1Q08174 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.77□□□□□ -1.65
PCDH1Q08174 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
PCDH1Q08174 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH1Q08174 MIR4691-201ENST00000583764 85 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 HMGB2P1-201ENST00000591146 634 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 AC018445.2-201ENST00000622987 260 ntBASIC4.77□□□□□ -1.65
PCDH1Q08174 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.77□□□□□ -1.65
PCDH1Q08174 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
PCDH1Q08174 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
PCDH1Q08174 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH1Q08174 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
PCDH1Q08174 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms