Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC0.74□□□□□ -2.29
COL7A1Q02388 SNORD108-201ENST00000459332 71 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 AC009901.1-201ENST00000506703 541 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.74□□□□□ -2.29
COL7A1Q02388 PRELID3BP4-201ENST00000515476 571 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 AP004247.1-201ENST00000531556 1289 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 AL163153.1-201ENST00000554223 283 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 AC092140.2-201ENST00000618027 521 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 AC007742.2-201ENST00000618226 398 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 AL031601.2-202ENST00000622650 282 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 RNU4-38P-201ENST00000364472 129 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 Y_RNA.412-201ENST00000384001 104 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 Z99497.1-201ENST00000421282 135 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC0.74□□□□□ -2.29
COL7A1Q02388 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC0.74□□□□□ -2.29
COL7A1Q02388 RPS23P3-201ENST00000470993 430 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 AC114322.1-201ENST00000506771 926 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 RNU1-104P-201ENST00000517280 175 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 SMARCE1P4-201ENST00000523647 241 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 MTCO1P47-201ENST00000523889 1271 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC0.74□□□□□ -2.29
COL7A1Q02388 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC0.73□□□□□ -2.29
COL7A1Q02388 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC0.73□□□□□ -2.29
COL7A1Q02388 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC0.73□□□□□ -2.29
COL7A1Q02388 AP000949.1-201ENST00000438328 629 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 RNU2-44P-201ENST00000516795 194 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 AC006270.3-201ENST00000605967 1036 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 AP000254.1-201ENST00000609934 520 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC0.73□□□□□ -2.29
COL7A1Q02388 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
COL7A1Q02388 MIR513A1-201ENST00000385138 129 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 MIR1265-201ENST00000408444 86 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 HMGB3P31-201ENST00000413333 595 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC0.73□□□□□ -2.29
COL7A1Q02388 FCF1P2-201ENST00000415284 583 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC0.73□□□□□ -2.29
COL7A1Q02388 ATG12P2-201ENST00000456830 416 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 AC113155.1-201ENST00000511141 769 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 RNU6-964P-201ENST00000516524 69 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC0.73□□□□□ -2.29
COL7A1Q02388 AC083923.1-201ENST00000523708 376 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC0.73□□□□□ -2.29
COL7A1Q02388 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.73□□□□□ -2.29
COL7A1Q02388 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC0.73□□□□□ -2.29
COL7A1Q02388 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC0.73□□□□□ -2.29
COL7A1Q02388 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC0.73□□□□□ -2.29
COL7A1Q02388 MIR6857-201ENST00000613267 93 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 AC140725.3-201ENST00000616193 880 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 CFTRP2-201ENST00000634304 199 ntBASIC0.73□□□□□ -2.29
COL7A1Q02388 AC000111.3-201ENST00000433478 193 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 UBE2FP3-201ENST00000436366 524 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 IPO7P1-201ENST00000442031 636 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 RPS27P1-201ENST00000450552 247 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC0.72□□□□□ -2.29
COL7A1Q02388 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC0.72□□□□□ -2.29
COL7A1Q02388 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC0.72□□□□□ -2.29
COL7A1Q02388 IGHVIII-38-1-201ENST00000521454 282 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC0.72□□□□□ -2.29
COL7A1Q02388 MTCO1P40-201ENST00000574371 625 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 AC020658.4-201ENST00000613987 684 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 CR382285.2-201ENST00000624662 1495 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 AC009812.4-201ENST00000569134 1805 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 AL136520.1-201ENST00000600311 1322 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.72□□□□□ -2.29
COL7A1Q02388 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC0.72□□□□□ -2.29
COL7A1Q02388 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC0.72□□□□□ -2.29
COL7A1Q02388 MIR936-201ENST00000401264 98 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 AC016691.1-201ENST00000441321 413 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 RBM43P1-201ENST00000476891 1081 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 AK3P2-201ENST00000507976 429 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC0.72□□□□□ -2.29
COL7A1Q02388 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC0.72□□□□□ -2.29
COL7A1Q02388 AC074029.2-201ENST00000551045 634 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 MIR4711-201ENST00000578274 70 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 BNIP3P26-201ENST00000600827 554 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC0.72□□□□□ -2.29
COL7A1Q02388 AC012443.1-201ENST00000605605 231 ntBASIC0.72□□□□□ -2.29
COL7A1Q02388 SSXP10-201ENST00000402595 565 ntBASIC0.71□□□□□ -2.29
COL7A1Q02388 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC0.71□□□□□ -2.29
COL7A1Q02388 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC0.71□□□□□ -2.29
COL7A1Q02388 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.71□□□□□ -2.29
COL7A1Q02388 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC0.71□□□□□ -2.29
COL7A1Q02388 DEFB108E-201ENST00000524692 240 ntBASIC0.71□□□□□ -2.29
COL7A1Q02388 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC0.71□□□□□ -2.29
COL7A1Q02388 MIR4714-201ENST00000580728 77 ntBASIC0.71□□□□□ -2.29
COL7A1Q02388 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC0.71□□□□□ -2.29
COL7A1Q02388 AC008962.1-201ENST00000605729 304 ntBASIC0.71□□□□□ -2.29
COL7A1Q02388 AC091925.1-201ENST00000623204 462 ntBASIC0.71□□□□□ -2.29
COL7A1Q02388 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC0.71□□□□□ -2.3
COL7A1Q02388 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
COL7A1Q02388 RNU6-203P-201ENST00000384038 104 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 RNU4-31P-201ENST00000384211 141 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 LINC01347-201ENST00000417964 355 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC0.71□□□□□ -2.3
COL7A1Q02388 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC0.71□□□□□ -2.3
COL7A1Q02388 GTF2IP12-201ENST00000456547 356 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 HSPE1P22-201ENST00000456856 327 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC0.71□□□□□ -2.3
COL7A1Q02388 CBX3P7-201ENST00000532876 502 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms