Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RAC1P7-201ENST00000445367 377 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXD9P28356 RBMY2UP-201ENST00000453474 324 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AC133473.1-201ENST00000455173 299 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXD9P28356 AL049714.1-201ENST00000466686 347 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 GMFBP1-201ENST00000467831 427 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 RPL7P49-201ENST00000471402 708 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AC078785.3-201ENST00000476607 425 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXD9P28356 Y_RNA.675-201ENST00000516389 149 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 RN7SKP83-201ENST00000516512 178 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 Y_RNA.701-201ENST00000516812 110 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 SUB1P1-201ENST00000524415 382 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AP004371.1-201ENST00000525240 214 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AC011979.2-201ENST00000527568 352 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXD9P28356 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXD9P28356 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXD9P28356 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXD9P28356 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXD9P28356 AC007458.1-201ENST00000542812 373 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXD9P28356 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXD9P28356 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXD9P28356 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXD9P28356 AC037471.2-201ENST00000564941 598 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 COX6CP3-201ENST00000580869 223 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AC010525.2-201ENST00000590920 195 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AL442067.2-201ENST00000614033 363 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AL590099.1-201ENST00000615276 138 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXD9P28356 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXD9P28356 MTCO1P12-201ENST00000414273 1543 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXD9P28356 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.68□□□□□ -1.82
HOXD9P28356 AL049781.1-201ENST00000623195 3585 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AC007656.2-201ENST00000624902 4547 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD9P28356 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD9P28356 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD9P28356 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD9P28356 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD9P28356 RNU4-79P-201ENST00000362764 141 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 RNU6-283P-201ENST00000364788 107 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 RNA5SP189-201ENST00000364920 115 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 MIR490-201ENST00000384865 128 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 MIR558-201ENST00000384920 94 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 HMGN1P24-201ENST00000412282 298 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD9P28356 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD9P28356 AP000907.1-201ENST00000428428 510 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD9P28356 AC073415.1-201ENST00000449240 153 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD9P28356 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD9P28356 RNU6-579P-201ENST00000516879 102 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD9P28356 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD9P28356 AC243972.3-201ENST00000539655 198 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 AC023050.3-201ENST00000541142 333 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD9P28356 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD9P28356 RPL21P12-201ENST00000559810 515 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 AC005034.5-201ENST00000604219 466 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 AC130324.3-201ENST00000614165 542 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 FRG1KP-201ENST00000623592 341 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 AC091925.2-201ENST00000625059 256 ntBASIC3.67□□□□□ -1.82
HOXD9P28356 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD9P28356 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD9P28356 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD9P28356 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD9P28356 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD9P28356 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD9P28356 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD9P28356 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD9P28356 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD9P28356 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD9P28356 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD9P28356 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD9P28356 NACAP2-201ENST00000318548 624 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 SNORA31-201ENST00000362607 130 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 RNU6-511P-201ENST00000363496 107 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 RNA5SP42-201ENST00000364278 115 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 SNORA7.2-201ENST00000364446 145 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 Y_RNA.367-201ENST00000365544 101 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 RNU6-629P-201ENST00000384061 103 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 Y_RNA.460-201ENST00000384255 102 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 RNU6-39P-201ENST00000384344 107 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 RNU6-332P-201ENST00000391193 108 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 RNU6-510P-201ENST00000391239 108 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD9P28356 AL162578.1-201ENST00000406202 378 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD9P28356 RPL35AP12-201ENST00000425362 338 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 MED13P1-201ENST00000428342 171 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 AL365400.1-201ENST00000431854 640 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD9P28356 RPL7P12-201ENST00000446719 750 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms