Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RNU6-1141P-201ENST00000364520 107 ntBASIC8.75□□□□□ -1.01
MSH5O43196 MIR544A-201ENST00000384855 91 ntBASIC8.75□□□□□ -1.01
MSH5O43196 U3.37-201ENST00000408528 213 ntBASIC8.75□□□□□ -1.01
MSH5O43196 TOMM22P2-201ENST00000430735 237 ntBASIC8.75□□□□□ -1.01
MSH5O43196 RNU7-116P-201ENST00000516940 62 ntBASIC8.75□□□□□ -1.01
MSH5O43196 IGKV1OR22-1-201ENST00000521497 360 ntBASIC8.75□□□□□ -1.01
MSH5O43196 IGKV2D-19-201ENST00000523346 262 ntBASIC8.75□□□□□ -1.01
MSH5O43196 AP004607.1-201ENST00000524456 203 ntBASIC8.75□□□□□ -1.01
MSH5O43196 AL355333.1-201ENST00000605632 279 ntBASIC8.75□□□□□ -1.01
MSH5O43196 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC8.75□□□□□ -1.01
MSH5O43196 MACROD2-203ENST00000402914 4425 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
MSH5O43196 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
MSH5O43196 SNORD56.1-201ENST00000362913 68 ntBASIC8.74□□□□□ -1.01
MSH5O43196 RNA5SP333-201ENST00000363466 118 ntBASIC8.74□□□□□ -1.01
MSH5O43196 RNU6-457P-201ENST00000363999 107 ntBASIC8.74□□□□□ -1.01
MSH5O43196 SNORD45B-201ENST00000364617 72 ntBASIC8.74□□□□□ -1.01
MSH5O43196 RNA5SP334-201ENST00000364825 118 ntBASIC8.74□□□□□ -1.01
MSH5O43196 RNU6-690P-201ENST00000365242 106 ntBASIC8.74□□□□□ -1.01
MSH5O43196 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC8.74□□□□□ -1.01
MSH5O43196 AL391987.1-201ENST00000441025 200 ntBASIC8.74□□□□□ -1.01
MSH5O43196 HBG2-204ENST00000444587 307 ntTSL 2 BASIC8.74□□□□□ -1.01
MSH5O43196 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC8.74□□□□□ -1.01
MSH5O43196 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
MSH5O43196 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC8.74□□□□□ -1.01
MSH5O43196 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.01
MSH5O43196 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
MSH5O43196 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.01
MSH5O43196 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
MSH5O43196 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
MSH5O43196 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
MSH5O43196 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC8.73□□□□□ -1.01
MSH5O43196 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
MSH5O43196 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC8.73□□□□□ -1.01
MSH5O43196 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC8.73□□□□□ -1.01
MSH5O43196 Y_RNA.95-201ENST00000363079 95 ntBASIC8.73□□□□□ -1.01
MSH5O43196 SNORA70.9-201ENST00000384370 135 ntBASIC8.73□□□□□ -1.01
MSH5O43196 COL11A2P1-205ENST00000441798 676 ntBASIC8.73□□□□□ -1.01
MSH5O43196 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC8.73□□□□□ -1.01
MSH5O43196 SCARNA15-202ENST00000516881 127 ntBASIC8.73□□□□□ -1.01
MSH5O43196 SNRPCP6-201ENST00000528310 210 ntBASIC8.73□□□□□ -1.01
MSH5O43196 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC8.73□□□□□ -1.01
MSH5O43196 AC021443.1-201ENST00000604478 211 ntBASIC8.73□□□□□ -1.01
MSH5O43196 AL589743.6-201ENST00000611025 117 ntBASIC8.73□□□□□ -1.01
MSH5O43196 U1.34-201ENST00000618578 162 ntBASIC8.73□□□□□ -1.01
MSH5O43196 AC131009.3-201ENST00000621809 287 ntBASIC8.73□□□□□ -1.01
MSH5O43196 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
MSH5O43196 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
MSH5O43196 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
MSH5O43196 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC8.73□□□□□ -1.01
MSH5O43196 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC8.73□□□□□ -1.01
MSH5O43196 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
MSH5O43196 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
MSH5O43196 ANKRD18EP-201ENST00000405487 2632 ntBASIC8.72□□□□□ -1.01
MSH5O43196 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
MSH5O43196 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC8.72□□□□□ -1.01
MSH5O43196 Y_RNA.155-201ENST00000363632 101 ntBASIC8.72□□□□□ -1.01
MSH5O43196 RNU6-1305P-201ENST00000364353 104 ntBASIC8.72□□□□□ -1.01
MSH5O43196 AP002088.1-201ENST00000382740 395 ntBASIC8.72□□□□□ -1.01
MSH5O43196 RN7SKP229-201ENST00000410465 302 ntBASIC8.72□□□□□ -1.01
MSH5O43196 RNU2-59P-201ENST00000410482 191 ntBASIC8.72□□□□□ -1.01
MSH5O43196 RNA5SP251-201ENST00000410614 137 ntBASIC8.72□□□□□ -1.01
MSH5O43196 RNA5SP504-201ENST00000410676 117 ntBASIC8.72□□□□□ -1.01
MSH5O43196 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC8.72□□□□□ -1.01
MSH5O43196 AC099782.1-201ENST00000425889 474 ntBASIC8.72□□□□□ -1.01
MSH5O43196 NDUFB1P1-201ENST00000435191 180 ntBASIC8.72□□□□□ -1.01
MSH5O43196 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC8.72□□□□□ -1.01
MSH5O43196 RNU6-347P-201ENST00000516658 105 ntBASIC8.72□□□□□ -1.01
MSH5O43196 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC8.72□□□□□ -1.01
MSH5O43196 MIR4443-201ENST00000585052 53 ntBASIC8.72□□□□□ -1.01
MSH5O43196 AL590032.1-201ENST00000604920 252 ntBASIC8.72□□□□□ -1.01
MSH5O43196 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC8.72□□□□□ -1.01
MSH5O43196 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC8.72□□□□□ -1.01
MSH5O43196 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC8.72□□□□□ -1.01
MSH5O43196 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC8.72□□□□□ -1.01
MSH5O43196 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC8.72□□□□□ -1.01
MSH5O43196 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC8.71□□□□□ -1.01
MSH5O43196 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
MSH5O43196 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC8.71□□□□□ -1.01
MSH5O43196 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC8.71□□□□□ -1.01
MSH5O43196 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC8.71□□□□□ -1.01
MSH5O43196 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
MSH5O43196 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
MSH5O43196 Y_RNA.124-201ENST00000363339 93 ntBASIC8.71□□□□□ -1.02
MSH5O43196 RNU6-1292P-201ENST00000383856 107 ntBASIC8.71□□□□□ -1.02
MSH5O43196 RNU6-524P-201ENST00000384270 107 ntBASIC8.71□□□□□ -1.02
MSH5O43196 AC023449.1-201ENST00000454464 154 ntBASIC8.71□□□□□ -1.02
MSH5O43196 AC096725.1-201ENST00000514266 313 ntBASIC8.71□□□□□ -1.02
MSH5O43196 SNORA74.1-201ENST00000516320 180 ntBASIC8.71□□□□□ -1.02
MSH5O43196 RNU6-1337P-201ENST00000516525 95 ntBASIC8.71□□□□□ -1.02
MSH5O43196 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC8.71□□□□□ -1.02
MSH5O43196 RN7SL356P-201ENST00000582228 248 ntBASIC8.71□□□□□ -1.02
MSH5O43196 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC8.71□□□□□ -1.02
MSH5O43196 AC008521.2-201ENST00000591021 259 ntBASIC8.71□□□□□ -1.02
MSH5O43196 AL110115.1-201ENST00000614396 364 ntBASIC8.71□□□□□ -1.02
MSH5O43196 Pinc.1-201ENST00000616452 154 ntBASIC8.71□□□□□ -1.02
MSH5O43196 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC8.71□□□□□ -1.02
MSH5O43196 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
MSH5O43196 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC8.71□□□□□ -1.02
MSH5O43196 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC8.71□□□□□ -1.02
MSH5O43196 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 148.2 ms