Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AL359547.2-201ENST00000615810 418 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AC131238.1-201ENST00000617135 328 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AC011944.2-201ENST00000624440 683 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CHMP3Q9Y3E7 ASNSP1-201ENST00000518311 1939 ntBASIC5.65□□□□□ -1.51
CHMP3Q9Y3E7 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.65□□□□□ -1.51
CHMP3Q9Y3E7 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CHMP3Q9Y3E7 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CHMP3Q9Y3E7 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.65□□□□□ -1.51
CHMP3Q9Y3E7 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CHMP3Q9Y3E7 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.65□□□□□ -1.51
CHMP3Q9Y3E7 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 Y_RNA.210-201ENST00000364161 110 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 RNU6-266P-201ENST00000364225 107 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 RNU6-1303P-201ENST00000364841 107 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 Y_RNA.447-201ENST00000384184 113 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AC096664.2-201ENST00000411843 406 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AL356387.2-201ENST00000422272 243 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AL158071.1-201ENST00000430315 461 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 ARL5AP4-201ENST00000430731 512 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AC011998.1-201ENST00000433403 117 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AL359672.1-201ENST00000442302 409 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 TDGF1P1-201ENST00000445734 527 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 RNU7-187P-201ENST00000458985 68 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AC114801.2-201ENST00000503825 781 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 HIGD1AP3-201ENST00000515857 278 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 RNU6-513P-201ENST00000516104 104 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AP000827.1-201ENST00000527814 258 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 HMGB3P26-201ENST00000560051 582 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AC023575.1-201ENST00000580510 358 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AC138627.2-201ENST00000624202 601 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 AL606534.2-204ENST00000635008 178 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 MIR6830-201ENST00000636015 70 ntBASIC5.64□□□□□ -1.51
CHMP3Q9Y3E7 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AL451142.2-201ENST00000429076 2090 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 RNA5SP509-201ENST00000364577 119 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 RNU6-472P-201ENST00000384299 107 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 MT-TC-201ENST00000387405 66 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AL592291.1-201ENST00000403830 352 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 CYCSP10-201ENST00000417973 294 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AC097713.2-201ENST00000430199 356 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 DYNLT3P2-201ENST00000442517 295 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AC112492.4-201ENST00000456549 352 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 CEACAMP4-201ENST00000457676 421 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 snoU109.4-201ENST00000458953 143 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AC008571.1-201ENST00000467232 300 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AC109327.1-201ENST00000471666 403 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 NIP7P2-201ENST00000485801 544 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AC068781.1-201ENST00000488231 618 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AC105758.1-201ENST00000506038 399 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 RNU6-390P-201ENST00000516259 103 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 CYCSP27-201ENST00000527643 293 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 HSBP1P1-201ENST00000555205 166 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AL034351.1-201ENST00000605288 668 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AC091979.2-201ENST00000607514 214 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 MIR8069-1-201ENST00000616627 86 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 MIR8069-2-201ENST00000621412 86 ntBASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.63□□□□□ -1.51
CHMP3Q9Y3E7 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 DDX10P1-201ENST00000448545 1933 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 PHKBP1-201ENST00000450951 1951 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms