Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SNORA31.20-201ENST00000517111 133 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 AP002392.1-201ENST00000537692 208 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 AP005403.1-201ENST00000579720 229 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 AC011447.4-201ENST00000587562 111 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 AC060766.3-201ENST00000591442 263 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AC144833.1-201ENST00000567953 4089 ntBASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 MIR411-201ENST00000362239 96 ntBASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 SNORD63-201ENST00000384262 68 ntBASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 SNORA53-201ENST00000391141 249 ntBASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AC244098.2-201ENST00000422068 99 ntBASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AC245028.1-201ENST00000423259 256 ntBASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 RPL27AP8-201ENST00000424277 446 ntBASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 RN7SL346P-201ENST00000491561 294 ntBASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 RNU6-496P-201ENST00000516145 99 ntBASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 MIR4659A-201ENST00000580269 81 ntBASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AC006115.2-201ENST00000596823 202 ntBASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 Z83818.1-201ENST00000603584 150 ntBASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 AL022311.1-201ENST00000623726 19416 ntBASIC5.63□□□□□ -1.51
LIMD1Q9UGP4 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 INTS6P1-201ENST00000504674 2530 ntBASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 RNU6-336P-201ENST00000364891 107 ntBASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 MTCO2P33-201ENST00000402100 465 ntBASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 MIR548I2-201ENST00000408348 149 ntBASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 AC007161.1-204ENST00000423039 460 ntBASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 AC092798.1-201ENST00000458542 409 ntBASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 COX6CP14-201ENST00000469580 174 ntBASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 RNU6-572P-201ENST00000516724 80 ntBASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 SNORA31.18-201ENST00000517043 134 ntBASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 MIR3133-201ENST00000583157 78 ntBASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 AL133481.2-203ENST00000607558 139 ntBASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 AC233981.2-201ENST00000611524 1614 ntBASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 SMG1P4-204ENST00000523028 4131 ntBASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIMD1Q9UGP4 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 135.8 ms