Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 U2.17-201ENST00000611454 95 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC015967.1-201ENST00000619893 476 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AL353748.2-201ENST00000622148 471 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC140479.6-201ENST00000633535 357 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 MTND5P42-201ENST00000637720 498 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.167-201ENST00000363735 109 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 RNU6-393P-201ENST00000384475 107 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AL583835.1-201ENST00000399570 407 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 SNORA11B-201ENST00000408175 129 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC074085.1-201ENST00000413598 418 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC018630.2-202ENST00000422992 927 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC017083.1-201ENST00000428093 483 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 PRPS1P1-201ENST00000445305 876 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AL118496.2-201ENST00000448300 230 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC107399.1-201ENST00000451226 265 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 RPL23AP81-201ENST00000455252 467 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 CCDC34P1-201ENST00000507441 517 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 RNU6-1170P-201ENST00000515974 106 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 SNORA31.22-201ENST00000517204 135 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AP004371.1-201ENST00000525240 214 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AP000763.2-201ENST00000540641 163 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AL118558.2-201ENST00000556294 238 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 XIAPP1-201ENST00000603162 600 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC092747.3-201ENST00000603769 301 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AL354984.3-201ENST00000604803 325 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.812-201ENST00000610788 101 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC012531.5-201ENST00000611375 151 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 PART1_1.1-201ENST00000611761 217 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.784-201ENST00000613803 101 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.787-201ENST00000616522 101 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.780-201ENST00000617336 101 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC126177.8-201ENST00000618339 1015 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.801-201ENST00000619005 101 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC008785.1-201ENST00000624475 456 ntBASIC3.81□□□□□ -1.8
VSX1Q9NZR4 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
VSX1Q9NZR4 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AC016588.2-201ENST00000632484 3021 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 DEFB108F-201ENST00000344638 222 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 SNORD74.4-201ENST00000364129 80 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RNU6-335P-201ENST00000364563 113 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 SNORD6-201ENST00000365444 73 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RNU6-398P-201ENST00000384143 109 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RNU6-1297P-201ENST00000384415 104 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RNA5SP332-201ENST00000391063 115 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 MIR1179-201ENST00000408703 91 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RNA5SP111-201ENST00000411386 101 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RPL26P29-201ENST00000415623 438 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 BTF3L4P3-201ENST00000418879 476 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RPL7L1P10-201ENST00000427790 463 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AC093106.2-201ENST00000428212 385 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AC011998.1-201ENST00000433403 117 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 AL772161.1-201ENST00000439130 476 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RNU7-167P-201ENST00000459160 62 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.632-201ENST00000459189 102 ntBASIC3.8□□□□□ -1.8
VSX1Q9NZR4 RNU7-66P-201ENST00000459469 62 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms