Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AP000857.1-201ENST00000532151 543 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.4□□□□□ -1.87
PCDH9Q9HC56 AC125611.2-201ENST00000551907 647 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 AC136619.2-201ENST00000563361 631 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.4□□□□□ -1.87
PCDH9Q9HC56 AP003465.2-201ENST00000602571 373 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 AL022154.1-201ENST00000604698 785 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 AC004908.2-201ENST00000609090 574 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 AC019176.2-201ENST00000611579 315 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 uc_338.1-201ENST00000612113 180 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.4□□□□□ -1.87
PCDH9Q9HC56 U6atac.1-201ENST00000616025 117 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 AC136475.10-201ENST00000620253 385 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 MIR6075-201ENST00000620782 95 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 AC124864.2-201ENST00000624736 186 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 AL136313.1-201ENST00000624804 202 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 U6.105-201ENST00000637379 88 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.87
PCDH9Q9HC56 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PCDH9Q9HC56 AC118273.1-201ENST00000525324 3006 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 AL138713.1-201ENST00000624026 2130 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 SRP72P2-201ENST00000344851 1979 ntBASIC3.4□□□□□ -1.87
PCDH9Q9HC56 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
PCDH9Q9HC56 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 ZNF826P-207ENST00000622273 1910 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 OR1S2-201ENST00000302592 978 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 RNU6-181P-201ENST00000363225 107 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 RNU1-33P-201ENST00000364249 162 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 RNY1P12-201ENST00000364251 105 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 RNU6-282P-201ENST00000365357 103 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 Y_RNA.554-201ENST00000384672 102 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 MIR23B-201ENST00000384832 97 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 MIR7-3-201ENST00000384898 110 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 SNORA48.8-201ENST00000391324 134 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 BX323014.1-201ENST00000412876 237 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 CCDC58P2-201ENST00000417131 366 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 MTCO3P30-201ENST00000426425 670 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AC079780.1-201ENST00000428259 207 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 HMGN2P20-201ENST00000437531 273 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AC115115.1-201ENST00000449927 248 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AC093392.2-201ENST00000450682 337 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 RPL21P10-201ENST00000463521 490 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AC010493.1-201ENST00000513479 292 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 APOOP4-201ENST00000513530 597 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 RNU6-445P-201ENST00000516949 107 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 RNA5SP337-201ENST00000517007 109 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 RNU6-1220P-201ENST00000517126 108 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AC068657.1-201ENST00000520807 306 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AC093331.1-201ENST00000521474 169 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AP004371.1-201ENST00000525240 214 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AC124947.2-202ENST00000552735 133 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AL133153.1-201ENST00000557756 303 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AL845331.3-202ENST00000562856 261 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AC087481.2-201ENST00000565492 330 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 MIR3167-201ENST00000579623 85 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 BNIP3P33-201ENST00000598912 569 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AL136164.4-201ENST00000625013 2135 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 AC019226.1-201ENST00000625666 515 ntBASIC3.39□□□□□ -1.87
PCDH9Q9HC56 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.39□□□□□ -1.87
PCDH9Q9HC56 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.38□□□□□ -1.87
PCDH9Q9HC56 AC004972.1-201ENST00000623934 2209 ntBASIC3.38□□□□□ -1.87
PCDH9Q9HC56 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
PCDH9Q9HC56 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
PCDH9Q9HC56 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
PCDH9Q9HC56 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
PCDH9Q9HC56 RNU6-1155P-201ENST00000363554 107 ntBASIC3.38□□□□□ -1.87
PCDH9Q9HC56 RNU4-1-201ENST00000363925 141 ntBASIC3.38□□□□□ -1.87
PCDH9Q9HC56 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
PCDH9Q9HC56 RNU6-1074P-201ENST00000383995 104 ntBASIC3.38□□□□□ -1.87
PCDH9Q9HC56 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
PCDH9Q9HC56 RNU4-55P-201ENST00000410731 137 ntBASIC3.38□□□□□ -1.87
PCDH9Q9HC56 RAD23BP2-201ENST00000416003 1207 ntBASIC3.38□□□□□ -1.87
PCDH9Q9HC56 UBE2FP1-201ENST00000416536 447 ntBASIC3.38□□□□□ -1.87
PCDH9Q9HC56 MTCO3P12-201ENST00000416718 547 ntBASIC3.38□□□□□ -1.87
PCDH9Q9HC56 TOMM22P1-201ENST00000418578 312 ntBASIC3.38□□□□□ -1.87
PCDH9Q9HC56 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.38□□□□□ -1.87
PCDH9Q9HC56 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.38□□□□□ -1.87
PCDH9Q9HC56 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC3.38□□□□□ -1.87
PCDH9Q9HC56 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.38□□□□□ -1.87
PCDH9Q9HC56 AC133104.1-201ENST00000429100 218 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 134.2 ms