Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC098679.4-201ENST00000624241 654 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.19□□□□□ -1.9
USP28Q96RU2 AC093591.3-201ENST00000634516 308 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 MTND4P4-201ENST00000439033 1366 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 AL356473.1-201ENST00000406203 1408 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
USP28Q96RU2 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.18□□□□□ -1.9
USP28Q96RU2 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.18□□□□□ -1.9
USP28Q96RU2 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP28Q96RU2 RNU6-28P-201ENST00000362378 107 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 RNU6-851P-201ENST00000384565 107 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AL138885.1-201ENST00000405921 675 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 FAT1P1-201ENST00000406588 507 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.18□□□□□ -1.9
USP28Q96RU2 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC3.18□□□□□ -1.9
USP28Q96RU2 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.18□□□□□ -1.9
USP28Q96RU2 UBE2D3P2-201ENST00000424409 445 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AL356583.2-201ENST00000426536 280 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.18□□□□□ -1.9
USP28Q96RU2 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.18□□□□□ -1.9
USP28Q96RU2 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.18□□□□□ -1.9
USP28Q96RU2 MRPL50P4-201ENST00000446432 475 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 PAXBP1P1-201ENST00000449315 447 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 TPT1P7-201ENST00000458300 517 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 RNA5SP310-201ENST00000459084 116 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AC083906.5-201ENST00000503722 328 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.18□□□□□ -1.9
USP28Q96RU2 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.18□□□□□ -1.9
USP28Q96RU2 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.18□□□□□ -1.9
USP28Q96RU2 KLHL2P1-201ENST00000508691 521 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 SNORA74D-201ENST00000516404 141 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.18□□□□□ -1.9
USP28Q96RU2 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.18□□□□□ -1.9
USP28Q96RU2 AC007536.1-201ENST00000533382 349 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AP000873.5-201ENST00000533906 236 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AC022880.1-201ENST00000534017 973 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AL355836.1-201ENST00000555951 870 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC3.18□□□□□ -1.9
USP28Q96RU2 ZNF861P-201ENST00000588126 639 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.18□□□□□ -1.9
USP28Q96RU2 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC3.18□□□□□ -1.9
USP28Q96RU2 AC024153.1-201ENST00000603103 365 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AC024220.1-201ENST00000603675 484 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AP000254.1-201ENST00000609934 520 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.18□□□□□ -1.9
USP28Q96RU2 LRRC77P-213ENST00000637727 880 ntBASIC3.18□□□□□ -1.9
USP28Q96RU2 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USP28Q96RU2 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.17□□□□□ -1.9
USP28Q96RU2 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.17□□□□□ -1.9
USP28Q96RU2 AL049780.3-201ENST00000624612 1583 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.17□□□□□ -1.9
USP28Q96RU2 FGF7P2-201ENST00000332473 296 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 Y_RNA.234-201ENST00000364409 97 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 RNU5E-5P-201ENST00000365379 116 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 SNORA18.3-201ENST00000384122 132 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 MIR887-201ENST00000401258 79 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 RNA5SP38-201ENST00000410750 119 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 RPL17P12-201ENST00000413391 526 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.17□□□□□ -1.9
USP28Q96RU2 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.17□□□□□ -1.9
USP28Q96RU2 MTCO2P5-201ENST00000422621 426 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.17□□□□□ -1.9
USP28Q96RU2 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.17□□□□□ -1.9
USP28Q96RU2 AC022018.1-201ENST00000430685 241 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.17□□□□□ -1.9
USP28Q96RU2 AC092473.1-201ENST00000441098 221 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.17□□□□□ -1.9
USP28Q96RU2 RPL7P36-201ENST00000444633 681 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 SUMO2P2-201ENST00000456482 255 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 AC104472.2-201ENST00000469035 601 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 RPL23AP11-201ENST00000475260 469 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 AC022447.3-201ENST00000506865 495 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.17□□□□□ -1.9
USP28Q96RU2 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.17□□□□□ -1.9
USP28Q96RU2 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.17□□□□□ -1.9
USP28Q96RU2 RN7SKP282-201ENST00000516824 299 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 SNORA31.26-201ENST00000517250 137 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.17□□□□□ -1.9
USP28Q96RU2 AC068587.4-201ENST00000533893 186 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.17□□□□□ -1.9
USP28Q96RU2 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USP28Q96RU2 AC087752.4-201ENST00000605911 462 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 HULC.1-201ENST00000612720 240 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 MIR6076-201ENST00000617521 113 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 CR381653.2-201ENST00000624041 768 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
USP28Q96RU2 CRYM-AS1-204ENST00000637983 556 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 AC097714.1-201ENST00000511272 1647 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP28Q96RU2 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP28Q96RU2 AC090740.1-201ENST00000623193 2262 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
USP28Q96RU2 CUL1P1-201ENST00000509510 2425 ntBASIC3.17□□□□□ -1.9
USP28Q96RU2 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
USP28Q96RU2 MIR26A1-201ENST00000362205 77 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 RNU6-623P-201ENST00000363143 105 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 RNU6-853P-201ENST00000364306 107 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 SNORA14A-201ENST00000364773 135 ntBASIC3.16□□□□□ -1.9
USP28Q96RU2 RNU6-348P-201ENST00000384386 107 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms