Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC118273.1-201ENST00000525324 3006 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 ZNF299P-201ENST00000406845 1804 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4□□□□□ -1.77
CCDC140Q96MF4 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC140Q96MF4 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC140Q96MF4 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC140Q96MF4 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC140Q96MF4 RNU6-78P-201ENST00000362897 107 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 RNU6-527P-201ENST00000363425 104 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 U3.6-201ENST00000363622 211 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 RNU4-42P-201ENST00000364738 142 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 RNU6-336P-201ENST00000364891 107 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 RNU1-43P-201ENST00000365052 165 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 RNU6-898P-201ENST00000365627 104 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 SET-203ENST00000372688 801 ntTSL 2 BASIC4□□□□□ -1.77
CCDC140Q96MF4 Y_RNA.401-201ENST00000383965 117 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 Y_RNA.452-201ENST00000384202 108 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 MIR600-201ENST00000385007 98 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 MIR625-201ENST00000385047 85 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC140Q96MF4 MIR1182-201ENST00000408363 97 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4□□□□□ -1.77
CCDC140Q96MF4 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4□□□□□ -1.77
CCDC140Q96MF4 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4□□□□□ -1.77
CCDC140Q96MF4 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4□□□□□ -1.77
CCDC140Q96MF4 AC110794.1-201ENST00000505816 425 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 RNU6-703P-201ENST00000516946 107 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 RNU7-4P-201ENST00000516961 62 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4□□□□□ -1.77
CCDC140Q96MF4 AP000889.1-201ENST00000530968 660 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 AC010186.2-204ENST00000537668 439 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 AC107016.1-201ENST00000550463 337 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 AC004584.2-201ENST00000570407 410 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 AC023575.1-201ENST00000580510 358 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 SUMO2P15-201ENST00000604285 278 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 AP005432.2-201ENST00000608162 586 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4□□□□□ -1.77
CCDC140Q96MF4 U4.1-201ENST00000620349 87 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 AC027309.3-201ENST00000623419 351 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 AC097372.5-201ENST00000623665 376 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4□□□□□ -1.77
CCDC140Q96MF4 MIR4272-201ENST00000635924 64 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC140Q96MF4 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC140Q96MF4 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC140Q96MF4 AC008669.1-201ENST00000565823 2178 ntBASIC4□□□□□ -1.77
CCDC140Q96MF4 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4□□□□□ -1.77
CCDC140Q96MF4 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC140Q96MF4 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
CCDC140Q96MF4 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC140Q96MF4 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
CCDC140Q96MF4 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC140Q96MF4 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AC104623.2-202ENST00000623477 4002 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 ADAM5-202ENST00000399789 1942 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AC066616.2-201ENST00000559334 1481 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 SNORA17.1-201ENST00000362945 126 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 Y_RNA.193-201ENST00000363979 102 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 Y_RNA.574-201ENST00000384766 95 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AL035079.1-201ENST00000405210 287 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 EIF4EP2-201ENST00000422816 654 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 HMGN2P30-201ENST00000423237 256 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 TMEM167AP1-201ENST00000423409 219 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 RPL7P2-201ENST00000427639 268 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AC009238.2-201ENST00000431026 355 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AL358472.1-201ENST00000431295 329 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 RPS3AP46-201ENST00000448352 682 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AC013470.1-201ENST00000453438 462 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AC112492.4-201ENST00000456549 352 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AC009127.1-201ENST00000467090 155 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 MRPS35P2-201ENST00000508242 191 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 RNU6-475P-201ENST00000516073 104 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 RNU6-928P-201ENST00000516876 104 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AL161670.1-201ENST00000554348 137 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AC004817.2-201ENST00000561794 651 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AMZ2P1-203ENST00000565833 850 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AC009852.2-201ENST00000567898 485 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AC006600.1-201ENST00000572529 153 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 MIR5188-201ENST00000583467 113 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 RPSAP73-201ENST00000614820 330 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 AC004825.2-201ENST00000616634 455 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 CR381572.2-201ENST00000624852 397 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms