Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 RNA5SP374-201ENST00000362939 125 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 RNA5SP393-201ENST00000363423 117 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 RNU6-744P-201ENST00000365557 107 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 RNU6-1316P-201ENST00000384242 108 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 RNU6-906P-201ENST00000384700 70 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 MTATP6P20-201ENST00000414147 562 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AL096701.2-201ENST00000416920 238 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 MED14P1-201ENST00000430517 648 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AL671855.1-201ENST00000446875 1203 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AC009961.3-201ENST00000449832 765 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 USP9YP10-201ENST00000454868 628 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 RPL12P25-201ENST00000455592 494 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 RNU7-26P-201ENST00000458980 63 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 MEMO1P3-201ENST00000459811 302 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 RN7SL863P-201ENST00000462370 296 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 MTCYBP35-201ENST00000503630 1137 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AC008837.2-201ENST00000513076 418 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AC034159.1-201ENST00000513885 583 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 RNA5SP290-201ENST00000517133 127 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 MRPS36P3-201ENST00000519284 130 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 MTCYBP23-201ENST00000558717 1102 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 MTND3P19-201ENST00000603825 345 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 Z99289.3-201ENST00000605586 594 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 SNHG22-203ENST00000617833 660 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 AC007998.5-201ENST00000622938 237 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 MIR622-201ENST00000638396 96 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 SNORD15B-201ENST00000384714 146 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 RPL23AP29-201ENST00000397284 453 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 RPL7P25-201ENST00000404151 721 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AL139095.1-201ENST00000404326 391 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 RNU2-49P-201ENST00000410666 184 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC007064.1-201ENST00000412238 351 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC080125.1-201ENST00000414888 684 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC063979.1-201ENST00000415539 377 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 MTATP6P17-201ENST00000431030 672 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 USP12PX-201ENST00000432383 1057 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 NANOGP2-201ENST00000435391 727 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC098831.1-201ENST00000440661 216 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AP000852.1-201ENST00000472460 573 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC135721.1-201ENST00000497954 479 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 RNA5SP216-201ENST00000516111 123 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 SCARNA17.1-201ENST00000516211 143 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 RNA5SP341-201ENST00000516261 117 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 SCARNA17.2-201ENST00000516334 143 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC026407.1-201ENST00000518369 204 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 LRRC34P1-201ENST00000542742 915 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC009712.1-201ENST00000564938 316 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC093536.2-201ENST00000565257 1406 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC100793.4-201ENST00000613683 429 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 SCARNA17.4-201ENST00000614296 143 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AP000770.2-201ENST00000623694 100 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC018692.3-201ENST00000623929 123 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC097520.1-201ENST00000624435 385 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC099063.3-201ENST00000642066 185 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 Z82209.1-201ENST00000422141 2135 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 MTND4P27-201ENST00000450813 1354 ntBASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.72□□□□□ -1.97
ZNF540Q8NDQ6 AC110491.1-201ENST00000562191 2010 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 RNU6-1072P-201ENST00000384703 107 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 RNU6-443P-201ENST00000384780 107 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 MIR513B-201ENST00000385136 84 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 UBE2FP1-201ENST00000416536 447 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms