Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL137100.2-201ENST00000555786 315 ntBASIC1.79□□□□□ -2.12
USP54Q70EL1 AL161734.1-201ENST00000609720 557 ntBASIC1.79□□□□□ -2.12
USP54Q70EL1 MIR6078-201ENST00000611069 100 ntBASIC1.79□□□□□ -2.12
USP54Q70EL1 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.79□□□□□ -2.12
USP54Q70EL1 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
USP54Q70EL1 RNY1-201ENST00000364228 113 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 RNU6-1-201ENST00000383898 107 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 RNU6-42P-201ENST00000384165 107 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 RNU6-36P-201ENST00000384172 107 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 RNU6-4P-201ENST00000384205 107 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 RNU6-5P-201ENST00000384238 107 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 RNU6-3P-201ENST00000384314 107 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 RNU6-2-201ENST00000384627 107 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 RNU6-9-201ENST00000384776 107 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 RNU6-33P-201ENST00000384793 107 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.78□□□□□ -2.12
USP54Q70EL1 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
USP54Q70EL1 AL645638.1-201ENST00000440519 361 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 AL121871.1-201ENST00000443413 436 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC1.78□□□□□ -2.12
USP54Q70EL1 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC1.78□□□□□ -2.12
USP54Q70EL1 RNA5SP61-201ENST00000516453 100 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 LY96-202ENST00000518893 430 ntTSL 3 BASIC1.78□□□□□ -2.12
USP54Q70EL1 AC087808.1-201ENST00000520501 361 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 AC011604.1-201ENST00000545978 196 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC1.78□□□□□ -2.12
USP54Q70EL1 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC1.78□□□□□ -2.12
USP54Q70EL1 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.78□□□□□ -2.12
USP54Q70EL1 DPRXP5-201ENST00000604662 539 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 RNU6-6P-201ENST00000606623 107 ntBASIC1.78□□□□□ -2.12
USP54Q70EL1 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC1.78□□□□□ -2.12
USP54Q70EL1 RNU6-263P-201ENST00000363811 107 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 RNU6-98P-201ENST00000384173 107 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 RPL30P14-201ENST00000482744 348 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 AC107398.1-201ENST00000486904 505 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 AC008885.2-201ENST00000509506 930 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.77□□□□□ -2.13
USP54Q70EL1 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.77□□□□□ -2.13
USP54Q70EL1 MIR151B-201ENST00000584249 96 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.77□□□□□ -2.13
USP54Q70EL1 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC1.77□□□□□ -2.13
USP54Q70EL1 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.77□□□□□ -2.13
USP54Q70EL1 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC1.77□□□□□ -2.13
USP54Q70EL1 ZNF519P1-201ENST00000449011 1626 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 RNA5SP363-201ENST00000365072 115 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 RNU6-1080P-201ENST00000383982 107 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 MT-TC-201ENST00000387405 66 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 AL356057.2-201ENST00000403318 432 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 TMEM167AP1-201ENST00000423409 219 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 RPS6P15-201ENST00000431996 751 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC1.77□□□□□ -2.13
USP54Q70EL1 MRPL42P6-201ENST00000486397 371 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC1.77□□□□□ -2.13
USP54Q70EL1 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC1.77□□□□□ -2.13
USP54Q70EL1 HMGB3P3-201ENST00000510526 400 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 AC016065.2-201ENST00000514530 444 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
USP54Q70EL1 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC1.77□□□□□ -2.13
USP54Q70EL1 EIF4EP5-201ENST00000528228 640 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 MIR4504-201ENST00000577413 92 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC1.77□□□□□ -2.13
USP54Q70EL1 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.77□□□□□ -2.13
USP54Q70EL1 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC1.77□□□□□ -2.13
USP54Q70EL1 AC245036.5-201ENST00000596330 847 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 AC092474.3-201ENST00000603022 568 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 AL078603.1-201ENST00000603824 313 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 AL136363.1-201ENST00000605349 337 ntBASIC1.77□□□□□ -2.13
USP54Q70EL1 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.76□□□□□ -2.13
USP54Q70EL1 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
USP54Q70EL1 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
USP54Q70EL1 AC135776.4-201ENST00000624300 1904 ntBASIC1.76□□□□□ -2.13
USP54Q70EL1 RNU6-342P-201ENST00000384521 104 ntBASIC1.76□□□□□ -2.13
USP54Q70EL1 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
USP54Q70EL1 CALM1P1-201ENST00000442082 433 ntBASIC1.76□□□□□ -2.13
USP54Q70EL1 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
USP54Q70EL1 AC092155.2-201ENST00000454675 477 ntBASIC1.76□□□□□ -2.13
USP54Q70EL1 UBE2Q2P9-201ENST00000490086 202 ntBASIC1.76□□□□□ -2.13
USP54Q70EL1 AC104057.1-201ENST00000515547 497 ntBASIC1.76□□□□□ -2.13
USP54Q70EL1 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC1.76□□□□□ -2.13
USP54Q70EL1 MIR3122-201ENST00000577243 73 ntBASIC1.76□□□□□ -2.13
USP54Q70EL1 AC005296.1-201ENST00000616145 209 ntBASIC1.76□□□□□ -2.13
USP54Q70EL1 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC1.76□□□□□ -2.13
USP54Q70EL1 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.76□□□□□ -2.13
USP54Q70EL1 MTCO3P12-201ENST00000416718 547 ntBASIC1.75□□□□□ -2.13
USP54Q70EL1 UBE2V1P6-201ENST00000430840 422 ntBASIC1.75□□□□□ -2.13
USP54Q70EL1 YWHAZP8-201ENST00000436935 731 ntBASIC1.75□□□□□ -2.13
USP54Q70EL1 SNRPGP13-201ENST00000442212 177 ntBASIC1.75□□□□□ -2.13
USP54Q70EL1 KATNBL1P3-201ENST00000443475 909 ntBASIC1.75□□□□□ -2.13
USP54Q70EL1 NAP1L1P3-201ENST00000462291 880 ntBASIC1.75□□□□□ -2.13
USP54Q70EL1 RPS29P1-201ENST00000465274 159 ntBASIC1.75□□□□□ -2.13
USP54Q70EL1 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC1.75□□□□□ -2.13
USP54Q70EL1 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC1.75□□□□□ -2.13
USP54Q70EL1 AC016957.1-201ENST00000534895 309 ntBASIC1.75□□□□□ -2.13
USP54Q70EL1 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC1.75□□□□□ -2.13
USP54Q70EL1 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC1.75□□□□□ -2.13
USP54Q70EL1 CBX3P2-202ENST00000583365 535 ntBASIC1.75□□□□□ -2.13
USP54Q70EL1 AC079597.1-201ENST00000624306 508 ntBASIC1.75□□□□□ -2.13
USP54Q70EL1 AP000648.3-201ENST00000623539 4507 ntBASIC1.75□□□□□ -2.13
USP54Q70EL1 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC1.74□□□□□ -2.13
USP54Q70EL1 RNA5SP354-201ENST00000391247 136 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms