Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 MTCYBP20-201ENST00000524239 1129 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AC125611.2-201ENST00000551907 647 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AL391156.1-201ENST00000554965 554 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AC074050.1-201ENST00000563247 211 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AC137800.2-201ENST00000574375 120 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 MIR3690-201ENST00000580266 75 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AC245014.2-201ENST00000603689 287 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AC246785.4-201ENST00000605374 287 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AC103710.2-201ENST00000609912 942 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 TUG1_2.1-201ENST00000614234 87 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AL355810.1-201ENST00000614629 552 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AC244100.1-202ENST00000621554 382 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AC073476.4-201ENST00000628409 72 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 DDX10P1-201ENST00000448545 1933 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 MTND5P26-201ENST00000426018 1752 ntBASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
SYNE3Q6ZMZ3 AC093010.3-201ENST00000570269 15214 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 SRP72P2-201ENST00000344851 1979 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 OR5J1P-201ENST00000313544 939 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 Y_RNA.41-201ENST00000362646 102 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 RNA5SP383-201ENST00000362934 120 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 RNY4P16-201ENST00000364768 94 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 RNY4P34-201ENST00000364779 95 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 RNU6-259P-201ENST00000383999 107 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 RNU6-192P-201ENST00000391253 100 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 MRPL42P2-201ENST00000403169 426 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 PIGFP2-201ENST00000421400 651 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AC104850.1-201ENST00000435940 476 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 HMGN2P20-201ENST00000437531 273 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 MTCO3P45-201ENST00000443036 613 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AL136380.1-201ENST00000447970 162 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 RNA5SP337-201ENST00000517007 109 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 RNU6-1073P-201ENST00000517182 106 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 HMGN1P28-201ENST00000521340 364 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AL163153.1-201ENST00000554223 283 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 FAM60BP-201ENST00000578364 658 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AC073648.5-201ENST00000603502 305 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AC008498.1-201ENST00000613012 531 ntBASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SYNE3Q6ZMZ3 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 SDAD1P2-201ENST00000441308 2028 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 RNU5A-6P-201ENST00000384136 116 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 RNU6-1103P-201ENST00000384150 107 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 RNU2-62P-201ENST00000410868 191 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 TRIAP1P1-201ENST00000427062 225 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AC006028.1-201ENST00000438379 402 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AC115115.1-201ENST00000449927 248 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 snoU13.4-201ENST00000458916 104 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 SLC25A15P5-201ENST00000508033 253 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 RNU6-64P-201ENST00000517119 105 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AP003392.2-201ENST00000527269 208 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 AC091903.1-201ENST00000624322 454 ntBASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SYNE3Q6ZMZ3 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms