Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
LIG3P49916 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LIG3P49916 ZNF807-201ENST00000328088 1707 ntBASIC4.86□□□□□ -1.63
LIG3P49916 ZNF285B-201ENST00000561698 1767 ntBASIC4.86□□□□□ -1.63
LIG3P49916 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.86□□□□□ -1.63
LIG3P49916 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
LIG3P49916 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.86□□□□□ -1.63
LIG3P49916 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
LIG3P49916 Y_RNA.364-201ENST00000365532 101 ntBASIC4.86□□□□□ -1.63
LIG3P49916 Y_RNA.473-201ENST00000384333 102 ntBASIC4.86□□□□□ -1.63
LIG3P49916 Y_RNA.534-201ENST00000384599 112 ntBASIC4.86□□□□□ -1.63
LIG3P49916 RNU6-306P-201ENST00000384617 107 ntBASIC4.86□□□□□ -1.63
LIG3P49916 U3.35-201ENST00000408405 208 ntBASIC4.86□□□□□ -1.63
LIG3P49916 RNU6-985P-201ENST00000410182 104 ntBASIC4.86□□□□□ -1.63
LIG3P49916 RPL37P18-201ENST00000411602 243 ntBASIC4.86□□□□□ -1.63
LIG3P49916 AL513331.1-201ENST00000411908 397 ntBASIC4.86□□□□□ -1.63
LIG3P49916 MTCO1P39-201ENST00000426148 480 ntBASIC4.86□□□□□ -1.63
LIG3P49916 AL160004.2-201ENST00000432935 350 ntBASIC4.86□□□□□ -1.63
LIG3P49916 AL645568.3-201ENST00000433683 316 ntBASIC4.86□□□□□ -1.63
LIG3P49916 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC4.86□□□□□ -1.63
LIG3P49916 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.86□□□□□ -1.63
LIG3P49916 AC004938.1-201ENST00000438468 308 ntBASIC4.86□□□□□ -1.63
LIG3P49916 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC4.86□□□□□ -1.63
LIG3P49916 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.86□□□□□ -1.63
LIG3P49916 SNORD5.1-201ENST00000458800 75 ntBASIC4.86□□□□□ -1.63
LIG3P49916 RN7SL558P-201ENST00000497468 299 ntBASIC4.86□□□□□ -1.63
LIG3P49916 RNU6-307P-201ENST00000516743 106 ntBASIC4.86□□□□□ -1.63
LIG3P49916 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.86□□□□□ -1.63
LIG3P49916 AP003122.3-201ENST00000526316 255 ntBASIC4.86□□□□□ -1.63
LIG3P49916 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIG3P49916 AC100770.1-201ENST00000532310 322 ntBASIC4.86□□□□□ -1.63
LIG3P49916 AP001880.2-201ENST00000538233 448 ntBASIC4.86□□□□□ -1.63
LIG3P49916 AC091042.1-201ENST00000579213 173 ntBASIC4.86□□□□□ -1.63
LIG3P49916 AC073539.2-201ENST00000597113 165 ntBASIC4.86□□□□□ -1.63
LIG3P49916 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.86□□□□□ -1.63
LIG3P49916 AL391358.1-201ENST00000605342 190 ntBASIC4.86□□□□□ -1.63
LIG3P49916 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.86□□□□□ -1.63
LIG3P49916 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
LIG3P49916 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIG3P49916 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIG3P49916 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.86□□□□□ -1.63
LIG3P49916 MAPK10-263ENST00000641052 4307 ntBASIC4.86□□□□□ -1.63
LIG3P49916 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIG3P49916 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LIG3P49916 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
LIG3P49916 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
LIG3P49916 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
LIG3P49916 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIG3P49916 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LIG3P49916 AC138393.1-203ENST00000327086 343 ntBASIC4.85□□□□□ -1.63
LIG3P49916 RNU6-490P-201ENST00000362985 107 ntBASIC4.85□□□□□ -1.63
LIG3P49916 RHOT1P2-201ENST00000366423 333 ntBASIC4.85□□□□□ -1.63
LIG3P49916 Y_RNA.605-201ENST00000410577 105 ntBASIC4.85□□□□□ -1.63
LIG3P49916 AC114755.2-201ENST00000413520 361 ntBASIC4.85□□□□□ -1.63
LIG3P49916 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.85□□□□□ -1.63
LIG3P49916 AC079780.1-201ENST00000428259 207 ntBASIC4.85□□□□□ -1.63
LIG3P49916 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC4.85□□□□□ -1.63
LIG3P49916 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.85□□□□□ -1.63
LIG3P49916 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.85□□□□□ -1.63
LIG3P49916 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.85□□□□□ -1.63
LIG3P49916 ARL2BPP10-201ENST00000446487 531 ntBASIC4.85□□□□□ -1.63
LIG3P49916 H2AFZP5-201ENST00000446960 382 ntBASIC4.85□□□□□ -1.63
LIG3P49916 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.85□□□□□ -1.63
LIG3P49916 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.85□□□□□ -1.63
LIG3P49916 AC103987.1-201ENST00000473394 348 ntBASIC4.85□□□□□ -1.63
LIG3P49916 MLLT10P2-201ENST00000506434 249 ntBASIC4.85□□□□□ -1.63
LIG3P49916 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC4.85□□□□□ -1.63
LIG3P49916 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.85□□□□□ -1.63
LIG3P49916 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.85□□□□□ -1.63
LIG3P49916 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIG3P49916 AP004371.1-201ENST00000525240 214 ntBASIC4.85□□□□□ -1.63
LIG3P49916 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.85□□□□□ -1.63
LIG3P49916 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.85□□□□□ -1.63
LIG3P49916 HMGB3P26-201ENST00000560051 582 ntBASIC4.85□□□□□ -1.63
LIG3P49916 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.85□□□□□ -1.63
LIG3P49916 AC007485.1-201ENST00000616755 206 ntBASIC4.85□□□□□ -1.63
LIG3P49916 AC138305.3-201ENST00000624988 240 ntBASIC4.85□□□□□ -1.63
LIG3P49916 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.85□□□□□ -1.63
LIG3P49916 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIG3P49916 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LIG3P49916 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
LIG3P49916 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
LIG3P49916 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LIG3P49916 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIG3P49916 AL356489.2-201ENST00000566968 3528 ntBASIC4.85□□□□□ -1.63
LIG3P49916 AC011266.1-201ENST00000624119 3569 ntBASIC4.85□□□□□ -1.63
LIG3P49916 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.85□□□□□ -1.63
LIG3P49916 AC004925.1-201ENST00000624256 2706 ntBASIC4.84□□□□□ -1.63
LIG3P49916 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.84□□□□□ -1.63
LIG3P49916 RNA5SP235-201ENST00000365411 114 ntBASIC4.84□□□□□ -1.63
LIG3P49916 MIR513A2-201ENST00000385249 127 ntBASIC4.84□□□□□ -1.63
LIG3P49916 U3.30-201ENST00000391308 210 ntBASIC4.84□□□□□ -1.63
LIG3P49916 RNA5SP104-201ENST00000410989 118 ntBASIC4.84□□□□□ -1.63
LIG3P49916 RN7SKP100-201ENST00000411258 284 ntBASIC4.84□□□□□ -1.63
LIG3P49916 AC063979.1-201ENST00000415539 377 ntBASIC4.84□□□□□ -1.63
LIG3P49916 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.84□□□□□ -1.63
LIG3P49916 AL451062.2-201ENST00000427515 271 ntBASIC4.84□□□□□ -1.63
LIG3P49916 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.84□□□□□ -1.63
LIG3P49916 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.84□□□□□ -1.63
LIG3P49916 AC011753.3-201ENST00000443436 406 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms