Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.41□□□□□ -2.02
RFX3P48380 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
RFX3P48380 FTLP6-201ENST00000355274 422 ntBASIC2.41□□□□□ -2.02
RFX3P48380 RNU6-97P-201ENST00000363387 104 ntBASIC2.41□□□□□ -2.02
RFX3P48380 RNU6-461P-201ENST00000364195 107 ntBASIC2.41□□□□□ -2.02
RFX3P48380 RNU6-1078P-201ENST00000364522 103 ntBASIC2.41□□□□□ -2.02
RFX3P48380 SNORA68.1-201ENST00000364537 132 ntBASIC2.41□□□□□ -2.02
RFX3P48380 SNORA23-201ENST00000365128 182 ntBASIC2.41□□□□□ -2.02
RFX3P48380 SNORD116.1-201ENST00000365628 92 ntBASIC2.41□□□□□ -2.02
RFX3P48380 RNU6-1207P-201ENST00000384343 107 ntBASIC2.41□□□□□ -2.02
RFX3P48380 RNU6-925P-201ENST00000384629 104 ntBASIC2.41□□□□□ -2.02
RFX3P48380 AL360182.1-201ENST00000397433 468 ntBASIC2.41□□□□□ -2.02
RFX3P48380 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.41□□□□□ -2.02
RFX3P48380 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.41□□□□□ -2.02
RFX3P48380 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.41□□□□□ -2.02
RFX3P48380 AC007919.1-201ENST00000429380 217 ntBASIC2.41□□□□□ -2.02
RFX3P48380 ZYG11AP1-201ENST00000430329 837 ntBASIC2.41□□□□□ -2.02
RFX3P48380 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.41□□□□□ -2.02
RFX3P48380 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.41□□□□□ -2.02
RFX3P48380 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.41□□□□□ -2.02
RFX3P48380 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.41□□□□□ -2.02
RFX3P48380 RPS20P20-201ENST00000460498 340 ntBASIC2.41□□□□□ -2.02
RFX3P48380 KC877373.1-201ENST00000479066 408 ntBASIC2.41□□□□□ -2.02
RFX3P48380 AC108729.1-201ENST00000487812 947 ntBASIC2.41□□□□□ -2.02
RFX3P48380 AC113155.1-201ENST00000511141 769 ntBASIC2.41□□□□□ -2.02
RFX3P48380 NRON-201ENST00000517270 370 ntBASIC2.41□□□□□ -2.02
RFX3P48380 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.41□□□□□ -2.02
RFX3P48380 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.41□□□□□ -2.02
RFX3P48380 AC023813.2-201ENST00000564321 469 ntBASIC2.41□□□□□ -2.02
RFX3P48380 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.41□□□□□ -2.02
RFX3P48380 RPL23AP84-201ENST00000571193 464 ntBASIC2.41□□□□□ -2.02
RFX3P48380 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.41□□□□□ -2.02
RFX3P48380 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.41□□□□□ -2.02
RFX3P48380 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC2.41□□□□□ -2.02
RFX3P48380 AC245517.5-201ENST00000611529 162 ntBASIC2.41□□□□□ -2.02
RFX3P48380 AP003485.2-201ENST00000623636 610 ntBASIC2.41□□□□□ -2.02
RFX3P48380 AC116618.1-201ENST00000634617 774 ntBASIC2.41□□□□□ -2.02
RFX3P48380 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.41□□□□□ -2.02
RFX3P48380 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
RFX3P48380 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.4□□□□□ -2.02
RFX3P48380 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
RFX3P48380 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.4□□□□□ -2.03
RFX3P48380 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.4□□□□□ -2.03
RFX3P48380 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
RFX3P48380 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.03
RFX3P48380 RNA5SP181-201ENST00000410246 98 ntBASIC2.4□□□□□ -2.03
RFX3P48380 MTND1P21-201ENST00000412991 285 ntBASIC2.4□□□□□ -2.03
RFX3P48380 RPLP0P7-201ENST00000416050 667 ntBASIC2.4□□□□□ -2.03
RFX3P48380 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.4□□□□□ -2.03
RFX3P48380 AC106883.1-201ENST00000418805 562 ntBASIC2.4□□□□□ -2.03
RFX3P48380 AC092648.1-201ENST00000425870 423 ntBASIC2.4□□□□□ -2.03
RFX3P48380 SDR42E1P3-201ENST00000438345 502 ntBASIC2.4□□□□□ -2.03
RFX3P48380 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC2.4□□□□□ -2.03
RFX3P48380 AP000936.2-201ENST00000447151 681 ntBASIC2.4□□□□□ -2.03
RFX3P48380 MTND1P31-201ENST00000449206 961 ntBASIC2.4□□□□□ -2.03
RFX3P48380 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.4□□□□□ -2.03
RFX3P48380 MRPS17P3-201ENST00000465453 385 ntBASIC2.4□□□□□ -2.03
RFX3P48380 AC107626.1-201ENST00000471084 183 ntBASIC2.4□□□□□ -2.03
RFX3P48380 AP000852.1-201ENST00000472460 573 ntBASIC2.4□□□□□ -2.03
RFX3P48380 AC021382.1-201ENST00000483523 359 ntBASIC2.4□□□□□ -2.03
RFX3P48380 RPS15AP34-201ENST00000487776 387 ntBASIC2.4□□□□□ -2.03
RFX3P48380 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.4□□□□□ -2.03
RFX3P48380 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC2.4□□□□□ -2.03
RFX3P48380 RNA5SP356-201ENST00000515972 94 ntBASIC2.4□□□□□ -2.03
RFX3P48380 RNA5SP216-201ENST00000516111 123 ntBASIC2.4□□□□□ -2.03
RFX3P48380 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC2.4□□□□□ -2.03
RFX3P48380 AC087276.1-201ENST00000529659 480 ntBASIC2.4□□□□□ -2.03
RFX3P48380 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC2.4□□□□□ -2.03
RFX3P48380 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.4□□□□□ -2.03
RFX3P48380 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.4□□□□□ -2.03
RFX3P48380 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.4□□□□□ -2.03
RFX3P48380 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
RFX3P48380 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.4□□□□□ -2.03
RFX3P48380 AC087465.1-201ENST00000560574 245 ntBASIC2.4□□□□□ -2.03
RFX3P48380 AC005498.1-201ENST00000592125 465 ntBASIC2.4□□□□□ -2.03
RFX3P48380 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.4□□□□□ -2.03
RFX3P48380 MTND3P19-201ENST00000603825 345 ntBASIC2.4□□□□□ -2.03
RFX3P48380 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.4□□□□□ -2.03
RFX3P48380 AL157392.4-201ENST00000609756 345 ntBASIC2.4□□□□□ -2.03
RFX3P48380 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.4□□□□□ -2.03
RFX3P48380 AC009268.2-201ENST00000621925 457 ntBASIC2.4□□□□□ -2.03
RFX3P48380 AC092608.2-201ENST00000624427 218 ntBASIC2.4□□□□□ -2.03
RFX3P48380 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.4□□□□□ -2.03
RFX3P48380 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
RFX3P48380 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
RFX3P48380 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.39□□□□□ -2.03
RFX3P48380 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.39□□□□□ -2.03
RFX3P48380 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
RFX3P48380 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
RFX3P48380 RNU6-741P-201ENST00000383889 107 ntBASIC2.39□□□□□ -2.03
RFX3P48380 MIR9-1-201ENST00000385198 89 ntBASIC2.39□□□□□ -2.03
RFX3P48380 UBE2V1P2-201ENST00000397758 440 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AL356421.1-201ENST00000403255 413 ntBASIC2.39□□□□□ -2.03
RFX3P48380 RN7SKP140-201ENST00000411196 284 ntBASIC2.39□□□□□ -2.03
RFX3P48380 USP9YP33-201ENST00000412220 421 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.39□□□□□ -2.03
RFX3P48380 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.39□□□□□ -2.03
RFX3P48380 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC2.39□□□□□ -2.03
RFX3P48380 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.39□□□□□ -2.03
RFX3P48380 USP9YP35-201ENST00000435696 412 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms