Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AIMP1P2-201ENST00000425294 312 ntBASIC1.78□□□□□ -2.12
CUX1P39880 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC1.78□□□□□ -2.12
CUX1P39880 SNORA31.16-201ENST00000516773 139 ntBASIC1.78□□□□□ -2.12
CUX1P39880 MIR3973-201ENST00000579824 107 ntBASIC1.78□□□□□ -2.12
CUX1P39880 MIR4295-201ENST00000585286 85 ntBASIC1.78□□□□□ -2.12
CUX1P39880 SNORA62.1-201ENST00000364287 154 ntBASIC1.77□□□□□ -2.13
CUX1P39880 Y_RNA.433-201ENST00000384089 102 ntBASIC1.77□□□□□ -2.13
CUX1P39880 TXNP7-201ENST00000406296 293 ntBASIC1.77□□□□□ -2.13
CUX1P39880 RNA5SP38-201ENST00000410750 119 ntBASIC1.77□□□□□ -2.13
CUX1P39880 AC241520.1-201ENST00000422654 1099 ntBASIC1.77□□□□□ -2.13
CUX1P39880 AL121601.2-201ENST00000438019 707 ntBASIC1.77□□□□□ -2.13
CUX1P39880 SDCBPP1-201ENST00000440192 890 ntBASIC1.77□□□□□ -2.13
CUX1P39880 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.77□□□□□ -2.13
CUX1P39880 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.77□□□□□ -2.13
CUX1P39880 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.77□□□□□ -2.13
CUX1P39880 AC245128.3-201ENST00000594721 748 ntBASIC1.77□□□□□ -2.13
CUX1P39880 AL138955.1-201ENST00000622881 1040 ntBASIC1.77□□□□□ -2.13
CUX1P39880 AC145207.9-201ENST00000623802 325 ntBASIC1.77□□□□□ -2.13
CUX1P39880 AC068620.4-201ENST00000636730 1182 ntBASIC1.77□□□□□ -2.13
CUX1P39880 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
CUX1P39880 ZNF33CP-201ENST00000432492 2030 ntBASIC1.77□□□□□ -2.13
CUX1P39880 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
CUX1P39880 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
CUX1P39880 AL355497.1-201ENST00000406262 551 ntBASIC1.76□□□□□ -2.13
CUX1P39880 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.76□□□□□ -2.13
CUX1P39880 AC096632.1-201ENST00000427395 310 ntBASIC1.76□□□□□ -2.13
CUX1P39880 MTATP6P4-201ENST00000427725 675 ntBASIC1.76□□□□□ -2.13
CUX1P39880 AL591212.2-201ENST00000433923 257 ntBASIC1.76□□□□□ -2.13
CUX1P39880 UBE2FP3-201ENST00000436366 524 ntBASIC1.76□□□□□ -2.13
CUX1P39880 AC108078.1-201ENST00000508073 725 ntBASIC1.76□□□□□ -2.13
CUX1P39880 RNA5SP384-201ENST00000516615 116 ntBASIC1.76□□□□□ -2.13
CUX1P39880 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC1.76□□□□□ -2.13
CUX1P39880 AC008127.2-201ENST00000549925 1075 ntBASIC1.76□□□□□ -2.13
CUX1P39880 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.76□□□□□ -2.13
CUX1P39880 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC1.76□□□□□ -2.13
CUX1P39880 RNA5SP465-201ENST00000391195 109 ntBASIC1.76□□□□□ -2.13
CUX1P39880 MTND4LP21-201ENST00000415303 295 ntBASIC1.76□□□□□ -2.13
CUX1P39880 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.76□□□□□ -2.13
CUX1P39880 SNRPEP4-201ENST00000435815 279 ntBASIC1.76□□□□□ -2.13
CUX1P39880 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.76□□□□□ -2.13
CUX1P39880 AL360221.1-201ENST00000445989 335 ntBASIC1.76□□□□□ -2.13
CUX1P39880 COX6CP18-201ENST00000448769 222 ntBASIC1.76□□□□□ -2.13
CUX1P39880 AC069277.2-201ENST00000454211 432 ntBASIC1.76□□□□□ -2.13
CUX1P39880 AC146507.1-201ENST00000468335 354 ntBASIC1.76□□□□□ -2.13
CUX1P39880 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC1.76□□□□□ -2.13
CUX1P39880 MIR514B-201ENST00000516774 80 ntBASIC1.76□□□□□ -2.13
CUX1P39880 RPS15AP11-201ENST00000594193 385 ntBASIC1.76□□□□□ -2.13
CUX1P39880 AP003117.1-201ENST00000602771 554 ntBASIC1.76□□□□□ -2.13
CUX1P39880 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC1.76□□□□□ -2.13
CUX1P39880 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
CUX1P39880 AL034374.1-201ENST00000406329 351 ntBASIC1.75□□□□□ -2.13
CUX1P39880 AL591034.1-201ENST00000407447 340 ntBASIC1.75□□□□□ -2.13
CUX1P39880 AL591704.2-201ENST00000421658 181 ntBASIC1.75□□□□□ -2.13
CUX1P39880 RPL21P66-201ENST00000426566 466 ntBASIC1.75□□□□□ -2.13
CUX1P39880 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC1.75□□□□□ -2.13
CUX1P39880 AC021087.2-201ENST00000504656 1203 ntBASIC1.75□□□□□ -2.13
CUX1P39880 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
CUX1P39880 AL161912.3-201ENST00000605404 628 ntBASIC1.75□□□□□ -2.13
CUX1P39880 AC211469.2-201ENST00000605461 205 ntBASIC1.75□□□□□ -2.13
CUX1P39880 SNORD114-21-201ENST00000606412 72 ntBASIC1.75□□□□□ -2.13
CUX1P39880 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
CUX1P39880 AC022079.2-201ENST00000619739 566 ntBASIC1.75□□□□□ -2.13
CUX1P39880 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.74□□□□□ -2.13
CUX1P39880 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CUX1P39880 MIR532-201ENST00000385025 91 ntBASIC1.74□□□□□ -2.13
CUX1P39880 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.74□□□□□ -2.13
CUX1P39880 ZNF90P2-204ENST00000419323 1075 ntBASIC1.74□□□□□ -2.13
CUX1P39880 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.74□□□□□ -2.13
CUX1P39880 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.74□□□□□ -2.13
CUX1P39880 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
CUX1P39880 AC104685.1-201ENST00000502445 371 ntBASIC1.74□□□□□ -2.13
CUX1P39880 HMGB3P17-201ENST00000504195 649 ntBASIC1.74□□□□□ -2.13
CUX1P39880 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC1.74□□□□□ -2.13
CUX1P39880 OSBPL9P3-201ENST00000534523 595 ntBASIC1.74□□□□□ -2.13
CUX1P39880 AL390862.1-201ENST00000635467 1469 ntBASIC1.73□□□□□ -2.13
CUX1P39880 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.73□□□□□ -2.13
CUX1P39880 AC110792.3-201ENST00000595906 1614 ntBASIC1.73□□□□□ -2.13
CUX1P39880 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
CUX1P39880 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
CUX1P39880 OR1L1-202ENST00000373686 1083 ntBASIC1.73□□□□□ -2.13
CUX1P39880 MIR1285-1-201ENST00000408593 84 ntBASIC1.73□□□□□ -2.13
CUX1P39880 RNU4-65P-201ENST00000410473 140 ntBASIC1.73□□□□□ -2.13
CUX1P39880 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC1.73□□□□□ -2.13
CUX1P39880 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.73□□□□□ -2.13
CUX1P39880 RPL37P6-202ENST00000464216 403 ntBASIC1.73□□□□□ -2.13
CUX1P39880 MTND3P24-201ENST00000506306 329 ntBASIC1.73□□□□□ -2.13
CUX1P39880 CASP1P1-201ENST00000526345 212 ntBASIC1.73□□□□□ -2.13
CUX1P39880 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.73□□□□□ -2.13
CUX1P39880 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
CUX1P39880 RNA5SP62-201ENST00000363457 110 ntBASIC1.72□□□□□ -2.13
CUX1P39880 SNORA70.7-201ENST00000384159 133 ntBASIC1.72□□□□□ -2.13
CUX1P39880 MIR193B-201ENST00000384907 83 ntBASIC1.72□□□□□ -2.13
CUX1P39880 RNU4-72P-201ENST00000410754 173 ntBASIC1.72□□□□□ -2.13
CUX1P39880 AC096533.1-201ENST00000411645 353 ntBASIC1.72□□□□□ -2.13
CUX1P39880 OR51A5P-201ENST00000415429 942 ntBASIC1.72□□□□□ -2.13
CUX1P39880 AC015922.2-201ENST00000435593 184 ntBASIC1.72□□□□□ -2.13
CUX1P39880 RPS27P1-201ENST00000450552 247 ntBASIC1.72□□□□□ -2.13
CUX1P39880 AL035407.2-201ENST00000454090 378 ntBASIC1.72□□□□□ -2.13
CUX1P39880 AL139109.1-201ENST00000455491 297 ntBASIC1.72□□□□□ -2.13
CUX1P39880 RNU6-1132P-201ENST00000459214 107 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms