Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 EI24P1-201ENST00000416584 867 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AC108032.1-201ENST00000416706 207 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD3P31249 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXD3P31249 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD3P31249 AL365400.1-201ENST00000431854 640 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD3P31249 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXD3P31249 PRPS1P1-201ENST00000445305 876 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.24□□□□□ -1.89
HOXD3P31249 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD3P31249 RNU6-329P-201ENST00000459618 107 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AC079804.1-201ENST00000461922 436 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 RPL23AP2-201ENST00000471227 466 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.24□□□□□ -1.89
HOXD3P31249 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD3P31249 AF213884.1-201ENST00000488102 463 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 DEFB109F-201ENST00000491870 277 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AP002812.1-201ENST00000495378 474 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 RPL23AP55-201ENST00000498163 452 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD3P31249 FGF7P4-201ENST00000509595 295 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD3P31249 Y_RNA.689-201ENST00000516589 107 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 SNORA31.20-201ENST00000517111 133 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD3P31249 MTND4P7-201ENST00000523876 130 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD3P31249 OR5D17P-201ENST00000531492 978 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AC100770.1-201ENST00000532310 322 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AC087241.2-201ENST00000535801 324 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.24□□□□□ -1.89
HOXD3P31249 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD3P31249 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXD3P31249 ANP32BP3-201ENST00000559213 706 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD3P31249 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.24□□□□□ -1.89
HOXD3P31249 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD3P31249 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD3P31249 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD3P31249 AL670379.6-201ENST00000603753 252 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AL670379.11-201ENST00000604059 253 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AC008162.1-201ENST00000604718 254 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AL670379.1-201ENST00000604752 252 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AL670379.5-201ENST00000605253 252 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AL670379.4-201ENST00000605279 254 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AL670379.12-201ENST00000605291 253 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AL670379.8-201ENST00000605353 252 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AL670379.7-201ENST00000605823 252 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD3P31249 AC128687.2-201ENST00000609657 566 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AL390240.1-201ENST00000612950 384 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AP001486.3-201ENST00000615334 372 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AC010133.1-201ENST00000615809 842 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 RMST_7.1-201ENST00000621935 268 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD3P31249 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HOXD3P31249 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
HOXD3P31249 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD3P31249 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD3P31249 MTND4P14-201ENST00000435799 1354 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD3P31249 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD3P31249 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXD3P31249 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
HOXD3P31249 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXD3P31249 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD3P31249 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD3P31249 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD3P31249 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD3P31249 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD3P31249 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD3P31249 RNU6-288P-201ENST00000363690 104 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.23□□□□□ -1.89
HOXD3P31249 RNU6-510P-201ENST00000391239 108 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD3P31249 RNU4-26P-201ENST00000410270 107 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 PDSS1P1-201ENST00000422953 1114 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 MTATP6P4-201ENST00000427725 675 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 RPL36AP6-201ENST00000435770 321 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXD3P31249 AC098591.2-201ENST00000510152 315 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 NDUFB4P9-201ENST00000511646 388 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 AC099522.1-202ENST00000514718 367 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXD3P31249 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
HOXD3P31249 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD3P31249 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXD3P31249 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD3P31249 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXD3P31249 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD3P31249 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD3P31249 uc_338.34-201ENST00000617467 174 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
HOXD3P31249 AC112200.1-201ENST00000625015 234 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 TPTEP1-208ENST00000636884 213 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms