Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU6-1207P-201ENST00000384343 107 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 Y_RNA.548-201ENST00000384656 105 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 SNORA40.3-201ENST00000390964 122 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 SAR1AP2-201ENST00000392696 594 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 RN7SKP58-201ENST00000411010 305 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 BMS1P22-201ENST00000414726 313 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 AL031779.1-201ENST00000415663 330 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXD4P09016 AC006445.1-201ENST00000491925 405 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 AC096751.1-202ENST00000502691 1067 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 AC105914.1-201ENST00000511798 226 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXD4P09016 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXD4P09016 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXD4P09016 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXD4P09016 AP002453.2-201ENST00000533503 320 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXD4P09016 AC010653.1-201ENST00000571108 881 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXD4P09016 TPMTP1-201ENST00000592307 737 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 AC079089.3-201ENST00000603094 673 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 AC112191.3-201ENST00000604371 277 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXD4P09016 AC006566.1-201ENST00000608943 513 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 AC005332.10-201ENST00000612725 619 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 AC099842.1-201ENST00000619919 596 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXD4P09016 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXD4P09016 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
HOXD4P09016 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.9□□□□□ -1.94
HOXD4P09016 OR1S2-201ENST00000302592 978 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 U3.6-201ENST00000363622 211 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 RPS20P2-201ENST00000402520 389 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 Y_RNA.598-201ENST00000410480 95 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 Y_RNA.608-201ENST00000410647 95 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.9□□□□□ -1.95
HOXD4P09016 USP9YP36-201ENST00000424581 829 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 RPL23AP82-202ENST00000427528 469 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXD4P09016 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXD4P09016 HMGN2P20-201ENST00000437531 273 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HOXD4P09016 ELOCP30-201ENST00000447108 299 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AC093392.2-201ENST00000450682 337 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 MTND1P27-201ENST00000451117 902 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AL353691.1-201ENST00000451332 387 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXD4P09016 SNRPFP4-201ENST00000456366 242 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 snoU13.8-201ENST00000458890 104 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 SNORD42A-201ENST00000459584 64 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 RN7SL863P-201ENST00000462370 296 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 CENPBD1P1-201ENST00000464061 469 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AC096576.1-201ENST00000489014 359 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AC112204.1-201ENST00000502591 103 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXD4P09016 COX7A2P2-201ENST00000505291 250 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXD4P09016 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.9□□□□□ -1.95
HOXD4P09016 RNU6-405P-201ENST00000516637 110 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 RNU6-1003P-201ENST00000517099 105 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 PSMA2P1-201ENST00000526365 646 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AC022878.1-201ENST00000530684 149 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 OR4P1P-201ENST00000530808 1136 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXD4P09016 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.9□□□□□ -1.95
HOXD4P09016 AC126177.3-201ENST00000551839 688 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXD4P09016 AL391156.1-201ENST00000554965 554 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXD4P09016 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXD4P09016 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXD4P09016 BNIP3P8-201ENST00000597863 560 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AC068790.6-201ENST00000602558 258 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AC093732.2-201ENST00000607950 274 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AC069234.5-201ENST00000611056 416 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AC138749.5-201ENST00000611461 208 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 Z99129.1-201ENST00000612510 255 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AC116165.2-201ENST00000616705 206 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXD4P09016 AC018692.3-201ENST00000623929 123 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 AC099654.13-201ENST00000639774 207 ntBASIC2.9□□□□□ -1.95
HOXD4P09016 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HOXD4P09016 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
HOXD4P09016 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
HOXD4P09016 MTND4P5-201ENST00000435821 1374 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 AL365361.1-201ENST00000566942 3481 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXD4P09016 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXD4P09016 Y_RNA.46-201ENST00000362695 102 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 RNU6-97P-201ENST00000363387 104 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 SNORA7.4-201ENST00000384249 137 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 Y_RNA.517-201ENST00000384551 106 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 RNU6-248P-201ENST00000410720 107 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXD4P09016 AC063979.1-201ENST00000415539 377 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 MTCO1P21-201ENST00000416634 589 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 RPL7P10-201ENST00000417407 739 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms