Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CYCSP43-201ENST00000438233 310 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AL138799.3-201ENST00000438968 350 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.18□□□□□ -1.9
LMX1BO60663 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.18□□□□□ -1.9
LMX1BO60663 AC084357.1-201ENST00000473404 255 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AC233702.1-201ENST00000482905 502 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.18□□□□□ -1.9
LMX1BO60663 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.18□□□□□ -1.9
LMX1BO60663 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.18□□□□□ -1.9
LMX1BO60663 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.18□□□□□ -1.9
LMX1BO60663 RNA5SP401-201ENST00000515920 127 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 CBX3P7-201ENST00000532876 502 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 GLYCAM1-201ENST00000546596 285 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AC123904.3-201ENST00000547218 814 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 SETP7-201ENST00000552169 453 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 HMGB1P6-201ENST00000569046 646 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 MIR4458-201ENST00000578872 75 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 MIR4644-201ENST00000579929 84 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.18□□□□□ -1.9
LMX1BO60663 MIR5187-201ENST00000583479 76 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AC105224.1-201ENST00000587055 421 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 GLUD1P4-201ENST00000590914 418 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.18□□□□□ -1.9
LMX1BO60663 Z84480.1-201ENST00000605131 311 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 BNIP3P10-201ENST00000605360 577 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AL713922.2-201ENST00000619384 716 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AC040168.1-201ENST00000623594 991 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 U6.105-201ENST00000637379 88 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.18□□□□□ -1.9
LMX1BO60663 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
LMX1BO60663 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.18□□□□□ -1.9
LMX1BO60663 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.18□□□□□ -1.9
LMX1BO60663 ZNF734P-201ENST00000419494 1534 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AC006020.1-201ENST00000420179 1854 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 RPS4XP5-202ENST00000449995 1334 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.17□□□□□ -1.9
LMX1BO60663 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
LMX1BO60663 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.17□□□□□ -1.9
LMX1BO60663 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
LMX1BO60663 RNU6-511P-201ENST00000363496 107 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 RNU5A-8P-201ENST00000364102 114 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 RNU4-76P-201ENST00000364509 141 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
LMX1BO60663 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LMX1BO60663 SNORA11.2-201ENST00000408318 127 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.17□□□□□ -1.9
LMX1BO60663 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.17□□□□□ -1.9
LMX1BO60663 PDCL2P1-201ENST00000419302 352 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.17□□□□□ -1.9
LMX1BO60663 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.17□□□□□ -1.9
LMX1BO60663 UBE2V1P13-201ENST00000436983 439 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 SEPT14P3-201ENST00000439401 183 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 AL732372.2-207ENST00000445840 183 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC3.17□□□□□ -1.9
LMX1BO60663 SNRPGP6-201ENST00000451124 220 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 MRPS31P2-201ENST00000451581 518 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 SEPT14P2-201ENST00000453405 183 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.17□□□□□ -1.9
LMX1BO60663 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.17□□□□□ -1.9
LMX1BO60663 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.17□□□□□ -1.9
LMX1BO60663 RPL32P34-201ENST00000486380 400 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.17□□□□□ -1.9
LMX1BO60663 AC068305.1-201ENST00000497406 726 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.17□□□□□ -1.9
LMX1BO60663 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.17□□□□□ -1.9
LMX1BO60663 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.17□□□□□ -1.9
LMX1BO60663 SEPT14P4-201ENST00000513445 186 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 SNORD27.1-201ENST00000516319 72 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 RN7SKP82-201ENST00000516786 223 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 IGKV2D-23-201ENST00000518179 286 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 FO082796.1-201ENST00000523795 183 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.17□□□□□ -1.9
LMX1BO60663 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.17□□□□□ -1.9
LMX1BO60663 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.17□□□□□ -1.9
LMX1BO60663 RPL21P12-201ENST00000559810 515 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 AL138976.2-201ENST00000563989 694 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 AC098848.2-201ENST00000588023 330 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 AC244505.7-201ENST00000599675 272 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 NRBF2P5-201ENST00000603087 788 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 AP003117.2-201ENST00000606010 545 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 AC009233.1-201ENST00000616477 371 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 MIR7975-201ENST00000619350 68 ntBASIC3.17□□□□□ -1.9
LMX1BO60663 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.17□□□□□ -1.9
LMX1BO60663 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.17□□□□□ -1.9
LMX1BO60663 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.17□□□□□ -1.9
LMX1BO60663 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
LMX1BO60663 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
LMX1BO60663 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
LMX1BO60663 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
LMX1BO60663 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
LMX1BO60663 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.17□□□□□ -1.9
LMX1BO60663 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
LMX1BO60663 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
LMX1BO60663 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.16□□□□□ -1.9
LMX1BO60663 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.16□□□□□ -1.9
LMX1BO60663 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
LMX1BO60663 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
LMX1BO60663 Y_RNA.367-201ENST00000365544 101 ntBASIC3.16□□□□□ -1.9
LMX1BO60663 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
LMX1BO60663 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms