Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AC090740.1-201ENST00000623193 2262 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 Y_RNA.199-201ENST00000364014 102 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 SNORD113-1-201ENST00000365321 69 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 U8.8-201ENST00000365399 135 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 MIR521-1-201ENST00000384902 87 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 MIR153-1-201ENST00000384914 90 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AL109941.1-201ENST00000401925 229 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AC063979.1-201ENST00000415539 377 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 EI24P1-201ENST00000416584 867 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AC091286.1-201ENST00000431233 461 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 RPL23AP2-201ENST00000471227 466 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 RN7SL214P-201ENST00000487317 265 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AC010469.2-201ENST00000496412 480 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AC074198.2-201ENST00000508153 258 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 OR51K1P-201ENST00000510214 950 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 Y_RNA.683-201ENST00000516508 93 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AF186190.1-201ENST00000517470 480 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 MIR5701-3-201ENST00000578890 82 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 MIR4300-201ENST00000581016 96 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 MIR5701-1-201ENST00000585138 82 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AC011445.2-201ENST00000599274 173 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 SNORD91B-202ENST00000608459 222 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 MIR5701-2-201ENST00000615634 82 ntBASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 MIR323A-201ENST00000362199 86 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 MIR411-201ENST00000362239 96 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AL591034.2-201ENST00000402839 359 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 RNA5SP494-201ENST00000410653 129 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 CYCSP33-201ENST00000414485 327 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 COX6CP10-201ENST00000416832 224 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AL353621.1-201ENST00000418219 243 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 DNAJC19P7-201ENST00000428811 344 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AC004938.1-201ENST00000438468 308 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 NDUFB4P10-201ENST00000452541 359 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AC013470.1-201ENST00000453438 462 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AC133134.1-201ENST00000466800 359 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 RN7SL174P-201ENST00000475578 289 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 COX6B1P2-201ENST00000489624 230 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 RN7SL547P-201ENST00000490793 290 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AL359273.1-201ENST00000510918 627 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AC008716.1-201ENST00000511084 513 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AC074250.1-201ENST00000511117 192 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 CBX3P4-201ENST00000538909 354 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AC093023.1-201ENST00000547375 507 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AC126177.5-201ENST00000549599 178 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 MIR3614-201ENST00000581261 86 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AC007448.1-201ENST00000582714 234 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 RNF138P2-201ENST00000603490 592 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AC034102.8-201ENST00000615146 484 ntBASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
HIF3AQ9Y2N7 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 U3.3-201ENST00000362986 216 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 RNA5SP90-201ENST00000364801 99 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 Y_RNA.324-201ENST00000365165 102 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 SNORA51.8-201ENST00000384234 132 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 RNU1-77P-201ENST00000390868 162 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 130.6 ms