Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AL121579.1-201ENST00000555129 305 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 MIR4286-201ENST00000580651 93 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AC012443.1-201ENST00000605605 231 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 DISC2.1-201ENST00000612827 205 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 RNVU1-4-201ENST00000612985 164 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 uc_338.11-201ENST00000619132 160 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 YWHAEP7-203ENST00000622054 312 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AC068647.1-201ENST00000489539 2265 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 Y_RNA.38-201ENST00000362617 102 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 RNU6-76P-201ENST00000384060 104 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AC110754.1-201ENST00000399740 601 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AL359634.1-202ENST00000404721 284 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 Z98941.1-201ENST00000407764 100 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 U3.39-201ENST00000408569 239 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 RNU6-628P-201ENST00000410675 107 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AC138393.2-201ENST00000414742 246 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AL109913.1-201ENST00000421173 514 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 GTF2IP20-201ENST00000431663 360 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 NEK4P1-201ENST00000433383 879 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AC091390.1-201ENST00000433904 331 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 HMGB3P30-201ENST00000457863 606 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AC078785.3-201ENST00000476607 425 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 RN7SL432P-201ENST00000484057 298 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AL163973.1-201ENST00000484753 577 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AC069439.1-201ENST00000494739 167 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AC026427.2-201ENST00000506228 536 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 SNORA31.20-201ENST00000517111 133 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 PARP1P2-201ENST00000556806 195 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AP005205.1-201ENST00000563503 508 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AC007224.1-201ENST00000564410 144 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AL121992.2-201ENST00000606262 256 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AL354950.2-201ENST00000617939 290 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AL713922.2-201ENST00000619384 716 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AC110801.1-201ENST00000623590 212 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AP003122.6-201ENST00000623831 495 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 MIR3662-201ENST00000637030 95 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 AC138649.5-201ENST00000637456 137 ntBASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LIMCH1Q9UPQ0 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 RNU6-173P-201ENST00000364215 104 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 SNORA70.2-201ENST00000364506 135 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 Y_RNA.255-201ENST00000364581 97 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 RNU6-1181P-201ENST00000384191 106 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 MTCO1P39-201ENST00000426148 480 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 AL158071.1-201ENST00000430315 461 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 MTATP6P16-201ENST00000434543 526 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 RNU7-182P-201ENST00000459009 62 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 GMFBP1-201ENST00000467831 427 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 AC010631.1-201ENST00000474150 156 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 KLHL2P1-201ENST00000508691 521 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 RNA5SP309-201ENST00000516670 106 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 SNORD60.2-201ENST00000516883 86 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 IGKV2D-23-201ENST00000518179 286 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 AF235103.2-201ENST00000525753 346 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 AP001646.1-201ENST00000527936 915 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 OR4H12P-201ENST00000556269 907 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 AC136624.4-201ENST00000573044 370 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 AC060780.3-201ENST00000589464 80 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 AL731566.2-201ENST00000618971 317 ntBASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 CASC19-280ENST00000642102 1351 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms