Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AC005832.2-201ENST00000538921 1430 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 RNY4P24-201ENST00000362735 96 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 DYNLT3P1-201ENST00000378574 347 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 RNU6-1197P-201ENST00000391183 107 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AL021407.1-201ENST00000404531 386 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AC009518.2-201ENST00000418056 731 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 RPL35AP12-201ENST00000425362 338 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AL049734.2-201ENST00000441066 616 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 UBE2D3P4-201ENST00000441973 436 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 BMI1P1-201ENST00000445879 941 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AL162389.1-201ENST00000449233 177 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 RPS27AP8-201ENST00000452665 445 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AC011825.1-201ENST00000484967 388 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 RPL30P5-201ENST00000494923 336 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AC114967.1-201ENST00000504890 259 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 RN7SKP272-201ENST00000516988 232 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AC025881.1-201ENST00000518851 512 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 MTCO1P47-201ENST00000523889 1271 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AL133153.1-201ENST00000557756 303 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 H3F3AP1-201ENST00000559984 334 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AC005951.2-201ENST00000576282 495 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 MIR5697-201ENST00000578045 78 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 GLUD1P4-201ENST00000590914 418 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AC121247.2-201ENST00000604776 136 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 AC105129.3-201ENST00000605455 485 ntBASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
CPSF3Q9UKF6 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 RNU1-140P-201ENST00000365040 165 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 SNORA23-201ENST00000365128 182 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 RNU1-39P-201ENST00000383897 165 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 RNU6-432P-201ENST00000384196 109 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 SNORA44-201ENST00000384584 132 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 NPM1P11-201ENST00000417106 855 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 OR2AS1P-201ENST00000427827 319 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 MED14P1-201ENST00000430517 648 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AC009969.1-201ENST00000438726 172 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AL049714.1-201ENST00000466686 347 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AP000797.1-201ENST00000478870 387 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AF131216.2-201ENST00000512316 564 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 MTND4LP18-201ENST00000526864 291 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AP000907.2-201ENST00000530827 353 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 ZNF519P3-201ENST00000557158 1032 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 HMGB1P14-201ENST00000557424 591 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 Z99497.2-201ENST00000603634 310 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AL391813.2-201ENST00000609113 322 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 OR10AB1P-201ENST00000609613 938 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 TUG1_2.1-201ENST00000614234 87 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AC004696.1-201ENST00000614345 607 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AC027807.2-201ENST00000616099 408 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AC027309.3-201ENST00000623419 351 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 AL159972.1-201ENST00000625150 448 ntBASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.25□□□□□ -1.89
CPSF3Q9UKF6 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 RNU5A-1-201ENST00000362698 116 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 RNU4-21P-201ENST00000362802 126 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 SNORA46-201ENST00000384762 135 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 MT-TH-201ENST00000387441 69 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 NDUFB4P5-201ENST00000415445 361 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 RPL35AP22-201ENST00000436855 335 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 174.2 ms