Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AL162578.1-201ENST00000406202 378 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AL606923.1-201ENST00000406616 190 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 MIR1251-201ENST00000408552 70 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC068533.1-201ENST00000418542 415 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC245054.1-201ENST00000420944 258 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 RPS6P12-201ENST00000432491 726 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 USP9YP7-201ENST00000436723 430 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC020550.1-201ENST00000447385 163 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 USP9YP32-201ENST00000452432 430 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 snoU13.24-201ENST00000458998 104 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 RPL21P11-201ENST00000461458 483 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 HMGN2P26-201ENST00000463169 339 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC104806.1-201ENST00000508720 308 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 VWA8P1-201ENST00000510889 176 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 GMPSP1-201ENST00000514075 579 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 RNU6-352P-201ENST00000516908 107 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 MIR4424-201ENST00000585257 86 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC067852.3-201ENST00000589177 561 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC007619.2-201ENST00000605743 379 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 MIR7154-201ENST00000620673 73 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC007998.5-201ENST00000622938 237 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AC090617.10-201ENST00000624308 134 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 AP004289.2-201ENST00000444413 1457 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 MARK2P15-201ENST00000432204 2186 ntBASIC4.09□□□□□ -1.76
TDP1Q9NUW8 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.09□□□□□ -1.76
TDP1Q9NUW8 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.09□□□□□ -1.76
TDP1Q9NUW8 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
TDP1Q9NUW8 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.08□□□□□ -1.76
TDP1Q9NUW8 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
TDP1Q9NUW8 RNU6-38P-201ENST00000384085 107 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.08□□□□□ -1.76
TDP1Q9NUW8 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
TDP1Q9NUW8 EI24P1-201ENST00000416584 867 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC4.08□□□□□ -1.76
TDP1Q9NUW8 DUTP6-201ENST00000425573 462 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AC008850.1-201ENST00000427546 362 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.08□□□□□ -1.76
TDP1Q9NUW8 MTND4LP16-201ENST00000440828 295 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.08□□□□□ -1.76
TDP1Q9NUW8 FGF7P3-201ENST00000454645 303 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 RNU6-333P-201ENST00000459117 107 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 RNU7-180P-201ENST00000459240 63 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AC006517.1-201ENST00000480485 328 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 RBBP4P6-201ENST00000508098 202 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AC098591.2-201ENST00000510152 315 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 NARSP2-201ENST00000518524 679 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.08□□□□□ -1.76
TDP1Q9NUW8 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AC078814.3-201ENST00000553036 491 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AC022968.1-201ENST00000567372 442 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AC012182.1-201ENST00000570133 895 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AC010928.3-201ENST00000587712 541 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AC005261.5-201ENST00000596280 355 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AL117336.2-201ENST00000602435 335 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 C8orf59P2-201ENST00000603441 271 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 DPPA3P3-201ENST00000603842 430 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AC104662.1-201ENST00000604448 511 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 RNU6-89P-201ENST00000606519 100 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AC005344.1-201ENST00000613391 459 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 AL360181.4-201ENST00000621752 134 ntBASIC4.08□□□□□ -1.76
TDP1Q9NUW8 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 RNU6-845P-201ENST00000362578 103 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 SNORA71.3-201ENST00000362582 128 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 RNU6-1287P-201ENST00000362914 107 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 RNU6-173P-201ENST00000364215 104 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 RNU6-1060P-201ENST00000384664 107 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 RNU6-387P-201ENST00000411331 105 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 OR6C66P-201ENST00000414917 930 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 RPL7P46-201ENST00000425129 740 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 ERLEC1P1-201ENST00000433806 578 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 NEFMP1-201ENST00000443423 1006 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 SNRPFP3-201ENST00000457792 225 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 RPL23AP11-201ENST00000475260 469 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 RPL21P99-201ENST00000480369 423 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 AC108860.1-201ENST00000484521 383 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 AC106872.2-201ENST00000494303 480 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 AC117522.3-201ENST00000507974 584 ntBASIC4.07□□□□□ -1.76
TDP1Q9NUW8 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.07□□□□□ -1.76
TDP1Q9NUW8 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 976.4 ms