Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 ISCA1P2-201ENST00000438679 421 ntBASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 RPL21P2-201ENST00000440049 481 ntBASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 RNU6ATAC13P-201ENST00000516152 131 ntBASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 PSMA2P1-201ENST00000526365 646 ntBASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AP002404.1-201ENST00000532005 451 ntBASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AC021171.1-201ENST00000603137 706 ntBASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AL161756.2-201ENST00000604597 246 ntBASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AP000240.1-201ENST00000609910 452 ntBASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AL591516.1-201ENST00000611326 274 ntBASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AC013562.2-201ENST00000611632 603 ntBASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 AK9-203ENST00000368948 2478 ntTSL 5 BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 RNU6-253P-201ENST00000384730 105 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 RPL7P25-201ENST00000404151 721 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 AL021407.1-201ENST00000404531 386 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 RNU2-68P-201ENST00000410878 191 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 AC023141.4-201ENST00000412031 328 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 AC063979.1-201ENST00000415539 377 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 SEPT2P1-201ENST00000419651 180 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 AL022400.1-201ENST00000423946 935 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 MED14P1-201ENST00000430517 648 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 MTND1P28-201ENST00000435623 950 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 AC055855.1-201ENST00000489563 579 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 RN7SL504P-201ENST00000494496 287 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 RNU5F-8P-201ENST00000515941 111 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 MIR544B-201ENST00000582372 78 ntBASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CHMP4AQ9BY43 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 SET-203ENST00000372688 801 ntTSL 2 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 RNU2-62P-201ENST00000410868 191 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 RNA5SP107-201ENST00000411358 122 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 BPY2DP-201ENST00000422208 265 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 RPL12P25-201ENST00000455592 494 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 RPS4XP22-201ENST00000480755 780 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 RPS15AP34-201ENST00000487776 387 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 AC105252.1-201ENST00000503089 286 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 RPS3AP4-201ENST00000555161 764 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 MIR4325-201ENST00000583049 90 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 MIR4506-201ENST00000584693 77 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 AC004805.2-201ENST00000605382 482 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 AC091965.4-201ENST00000607691 587 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 DUSP12P1-201ENST00000612874 516 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 AC079416.3-201ENST00000624479 549 ntBASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.06□□□□□ -1.76
CHMP4AQ9BY43 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHMP4AQ9BY43 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
CHMP4AQ9BY43 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC4.05□□□□□ -1.76
CHMP4AQ9BY43 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHMP4AQ9BY43 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.05□□□□□ -1.76
CHMP4AQ9BY43 RNU6-461P-201ENST00000364195 107 ntBASIC4.05□□□□□ -1.76
CHMP4AQ9BY43 U3.11-201ENST00000364476 212 ntBASIC4.05□□□□□ -1.76
CHMP4AQ9BY43 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CHMP4AQ9BY43 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.05□□□□□ -1.76
CHMP4AQ9BY43 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC4.05□□□□□ -1.76
CHMP4AQ9BY43 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC4.05□□□□□ -1.76
CHMP4AQ9BY43 AC006366.1-201ENST00000422002 759 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms