Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 OR5H6-203ENST00000642105 978 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 RNU6-853P-201ENST00000364306 107 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AL139397.2-201ENST00000404529 772 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 RNA5SP21-201ENST00000410917 96 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 Z85995.1-201ENST00000415547 335 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 CCDC58P2-201ENST00000417131 366 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 HMGB1P49-201ENST00000418882 569 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC092017.2-201ENST00000427600 362 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AL592447.1-201ENST00000447592 540 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC104563.1-201ENST00000476147 376 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 VN1R104P-201ENST00000505115 1009 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC034244.1-201ENST00000507687 207 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC091826.1-201ENST00000514065 313 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC026801.2-201ENST00000515352 425 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 RNU6-1256P-201ENST00000516539 103 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 NRON-201ENST00000517270 370 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 RNU1-104P-201ENST00000517280 175 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC087276.1-201ENST00000529659 480 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC023050.2-201ENST00000544968 387 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 MTND1P24-201ENST00000552175 861 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 MIR3921-201ENST00000577308 85 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC103810.1-201ENST00000579873 453 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 MIR5092-201ENST00000583139 88 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 MIR4999-201ENST00000585029 91 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AL356575.1-201ENST00000603008 283 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AP002826.1-201ENST00000608835 315 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AL391813.2-201ENST00000609113 322 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC245517.5-201ENST00000611529 162 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 AC008568.2-201ENST00000623862 2313 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 ZNF736P9Y-201ENST00000439586 1345 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.36□□□□□ -2.03
CCDC54Q8NEL0 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AC009902.3-201ENST00000606235 2172 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 SNORA67.1-201ENST00000364749 141 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 SNORA23-201ENST00000365128 182 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 RNU6-637P-201ENST00000384050 107 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 CCNG1P1-201ENST00000406783 885 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 EEF1A1P41-201ENST00000414667 207 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 LARP1BP3-201ENST00000437229 869 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 SNRPEP7-201ENST00000438350 220 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 FAM103A2P-201ENST00000444122 354 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AL109741.2-201ENST00000455561 343 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 MTCYBP35-201ENST00000503630 1137 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AL359273.1-201ENST00000510918 627 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 RNU6-928P-201ENST00000516876 104 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AMZ2P1-203ENST00000565833 850 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AL354943.1-201ENST00000572103 781 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AC011260.1-201ENST00000578420 472 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 MIR3944-201ENST00000581277 108 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AC060771.1-201ENST00000582031 164 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 MIR3609-201ENST00000582661 80 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 VN1R92P-201ENST00000598511 928 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AL391001.1-201ENST00000602747 715 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AC079089.3-201ENST00000603094 673 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AL031281.1-201ENST00000604049 488 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AL139344.1-201ENST00000605228 195 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms