Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 Y_RNA.324-201ENST00000365165 102 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 RNU6-1062P-201ENST00000383908 107 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 SNORD73A-201ENST00000386062 65 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 AL080315.1-201ENST00000406055 466 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 CYCSP33-201ENST00000414485 327 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 AC119751.6-201ENST00000416712 186 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 APOOP4-201ENST00000513530 597 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 AL671862.1-201ENST00000515851 349 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 Y_RNA.687-201ENST00000516558 91 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 RNU6-709P-201ENST00000517257 104 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 CBX3P8-201ENST00000532412 525 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 CPDP1-201ENST00000579660 283 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 SNORA74C-1-201ENST00000580726 201 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 SNORD84-203ENST00000584275 78 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 AC087385.3-201ENST00000620477 187 ntBASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
UBE3DQ7Z6J8 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AL139811.1-201ENST00000424779 2299 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 RNU4-44P-201ENST00000363050 141 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 RNU6-398P-201ENST00000384143 109 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 MIR301A-201ENST00000385261 86 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 MT-TW-201ENST00000387382 68 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 U3.30-201ENST00000391308 210 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 RNU6-325P-201ENST00000411132 105 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AL513331.1-201ENST00000411908 397 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 EIF4HP2-201ENST00000424380 563 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 RN7SL329P-201ENST00000467740 299 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 RPL23AP2-201ENST00000471227 466 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AC093270.2-201ENST00000486157 792 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 HMGB3P16-201ENST00000508037 287 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AC113155.1-201ENST00000511141 769 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 Y_RNA.700-201ENST00000516806 100 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AC021006.3-201ENST00000530771 192 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 HSPE1P20-201ENST00000538133 289 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AC126177.3-201ENST00000551839 688 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AC011487.3-201ENST00000593607 453 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AL390123.1-201ENST00000603216 237 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AL121932.1-201ENST00000605542 214 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AC008962.1-201ENST00000605729 304 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 CR381572.2-201ENST00000624852 397 ntBASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
UBE3DQ7Z6J8 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
UBE3DQ7Z6J8 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.59□□□□□ -1.67
UBE3DQ7Z6J8 AC008079.2-201ENST00000623543 20396 ntBASIC4.59□□□□□ -1.67
UBE3DQ7Z6J8 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
UBE3DQ7Z6J8 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
UBE3DQ7Z6J8 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.67
UBE3DQ7Z6J8 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.59□□□□□ -1.67
UBE3DQ7Z6J8 RNU6-770P-201ENST00000363929 105 ntBASIC4.59□□□□□ -1.67
UBE3DQ7Z6J8 Y_RNA.376-201ENST00000365638 108 ntBASIC4.59□□□□□ -1.67
UBE3DQ7Z6J8 RNU6-395P-201ENST00000365662 106 ntBASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 166.3 ms