Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC1.38□□□□□ -2.19
FOXA3P55318 AC080013.4-201ENST00000607624 649 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 MIR6873-201ENST00000622788 63 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC1.38□□□□□ -2.19
FOXA3P55318 MIR219B-201ENST00000637023 88 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 AL136360.1-201ENST00000503377 1900 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.38□□□□□ -2.19
FOXA3P55318 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
FOXA3P55318 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.37□□□□□ -2.19
FOXA3P55318 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC1.37□□□□□ -2.19
FOXA3P55318 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC1.37□□□□□ -2.19
FOXA3P55318 HSPA8P4-201ENST00000511877 1920 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.37□□□□□ -2.19
FOXA3P55318 SNORA64-201ENST00000384674 134 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 AL356432.1-201ENST00000405809 419 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 RNU2-15P-201ENST00000410692 191 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 UBE2V1P11-201ENST00000411559 285 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 Z92545.1-201ENST00000411782 234 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.37□□□□□ -2.19
FOXA3P55318 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.37□□□□□ -2.19
FOXA3P55318 BEND7P1-201ENST00000422058 457 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA3P55318 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA3P55318 AL512637.2-201ENST00000431287 1256 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
FOXA3P55318 RPS15AP5-201ENST00000436276 388 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 KRTAP19-11P-201ENST00000439851 104 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 RPL23AP3-201ENST00000453844 468 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 AC092757.1-201ENST00000467293 467 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 SCARNA3-201ENST00000517097 143 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA3P55318 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA3P55318 HMGB1P1-201ENST00000522557 636 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 AP001317.1-201ENST00000531194 960 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA3P55318 LINC00933-203ENST00000559812 219 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 MIR4419B-201ENST00000577260 68 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 MIR3618-201ENST00000580330 88 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 AL021997.1-201ENST00000605757 193 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 AC106052.1-201ENST00000608029 497 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 AC103710.1-201ENST00000610003 901 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 AC010678.1-201ENST00000614118 713 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 U4atac.1-201ENST00000618345 95 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA3P55318 AC007998.5-201ENST00000622938 237 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 AL390862.1-201ENST00000635467 1469 ntBASIC1.37□□□□□ -2.19
FOXA3P55318 ELF2P3-201ENST00000445099 1506 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
FOXA3P55318 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
FOXA3P55318 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
FOXA3P55318 RNU5A-1-201ENST00000362698 116 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC1.36□□□□□ -2.19
FOXA3P55318 RNU1-73P-201ENST00000383971 164 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 RNU6-750P-201ENST00000390946 107 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
FOXA3P55318 SNORA11.1-201ENST00000408133 129 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 RNU2-2P-201ENST00000410396 191 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 AC096649.2-201ENST00000416186 393 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA3P55318 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC1.36□□□□□ -2.19
FOXA3P55318 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.36□□□□□ -2.19
FOXA3P55318 PIGFP3-201ENST00000441918 722 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 RPS26P30-201ENST00000443431 335 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA3P55318 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA3P55318 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.36□□□□□ -2.19
FOXA3P55318 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA3P55318 MRPS17P3-201ENST00000465453 385 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 BZW1P2-201ENST00000473537 826 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 AC022483.1-201ENST00000514020 567 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 SCARNA15.2-201ENST00000516409 127 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 CR383656.7-201ENST00000548164 174 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA3P55318 AC124947.2-202ENST00000552735 133 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA3P55318 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA3P55318 AC009097.3-201ENST00000563557 1018 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC1.36□□□□□ -2.19
FOXA3P55318 AC010928.2-201ENST00000588017 287 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 AL390838.2-201ENST00000602394 274 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 AC008121.1-201ENST00000603244 268 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 AL031176.1-201ENST00000604554 466 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 AC007038.2-201ENST00000608095 740 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 U2.15-201ENST00000611544 191 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 U2.16-201ENST00000613119 191 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 U2.12-201ENST00000613778 191 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 U2.20-201ENST00000613956 192 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 U2.9-201ENST00000615427 191 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 U2.11-201ENST00000616345 191 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 U2.2-201ENST00000616535 191 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 U2.3-201ENST00000617785 191 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 U2.19-201ENST00000618602 191 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 RNU2-1-201ENST00000618664 191 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 U2.6-201ENST00000619225 191 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 U2.5-201ENST00000619465 191 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 U2.10-201ENST00000620268 191 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 AC012150.2-201ENST00000621300 544 ntBASIC1.36□□□□□ -2.19
FOXA3P55318 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
FOXA3P55318 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC1.35□□□□□ -2.19
FOXA3P55318 ADAM3A-203ENST00000461344 2157 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms