Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 OR5H15-201ENST00000383696 930 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 Y_RNA.559-201ENST00000384686 107 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 DEFB108C-201ENST00000400154 252 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 HMGB1P11-201ENST00000413899 637 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.21□□□□□ -1.9
HNF4AP41235 RPS24P1-201ENST00000438550 371 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 HMGB3P11-201ENST00000440127 604 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.21□□□□□ -1.9
HNF4AP41235 CBWD4P-201ENST00000445695 655 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 ST13P20-201ENST00000447996 1065 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 Z99127.3-201ENST00000448158 395 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.21□□□□□ -1.9
HNF4AP41235 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.21□□□□□ -1.9
HNF4AP41235 PRSS3P4-201ENST00000453323 162 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 RPS20P20-201ENST00000460498 340 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.21□□□□□ -1.9
HNF4AP41235 AP001025.2-201ENST00000490908 477 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 AC079140.3-201ENST00000511111 550 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 RNA5SP380-201ENST00000517190 98 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 RNA5SP291-201ENST00000517222 105 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.21□□□□□ -1.9
HNF4AP41235 AP002963.1-201ENST00000530590 184 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 AP000873.5-201ENST00000533906 236 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.21□□□□□ -1.9
HNF4AP41235 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.21□□□□□ -1.9
HNF4AP41235 MIR548AB-201ENST00000584917 84 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.21□□□□□ -1.9
HNF4AP41235 AC008739.3-201ENST00000603262 127 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 AP000403.1-201ENST00000603349 851 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 AC087752.4-201ENST00000605911 462 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 AC013562.2-201ENST00000611632 603 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 uc_338.1-201ENST00000612113 180 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 AC025594.3-201ENST00000613068 790 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.21□□□□□ -1.9
HNF4AP41235 AC025048.6-202ENST00000627667 438 ntBASIC3.21□□□□□ -1.9
HNF4AP41235 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
HNF4AP41235 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
HNF4AP41235 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HNF4AP41235 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.2□□□□□ -1.9
HNF4AP41235 ZNF519P1-201ENST00000449011 1626 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 RNA5SP119-201ENST00000362715 117 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 Y_RNA.97-201ENST00000363094 102 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 Y_RNA.359-201ENST00000365498 102 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.2□□□□□ -1.9
HNF4AP41235 RNY3P10-201ENST00000384764 102 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 RNA5SP171-201ENST00000391071 115 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 RNA5SP354-201ENST00000391247 136 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 MTCO3P41-201ENST00000414801 328 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AL389915.1-201ENST00000422463 466 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AL353678.1-201ENST00000422735 741 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AC104332.2-201ENST00000429959 156 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.2□□□□□ -1.9
HNF4AP41235 MTND1P28-201ENST00000435623 950 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 RPL35AP22-201ENST00000436855 335 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 Z82210.1-201ENST00000440037 231 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.2□□□□□ -1.9
HNF4AP41235 AL831737.1-201ENST00000441288 271 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.2□□□□□ -1.9
HNF4AP41235 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.2□□□□□ -1.9
HNF4AP41235 HMGB1P36-201ENST00000487709 576 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AC093663.1-201ENST00000497190 394 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AC009901.1-201ENST00000506703 541 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 MTND5P4-201ENST00000514978 288 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AC022880.1-201ENST00000534017 973 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.2□□□□□ -1.9
HNF4AP41235 AC005476.1-201ENST00000554427 397 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 TRAV28-201ENST00000557548 323 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 NCAPGP2-201ENST00000557911 754 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AC091489.2-201ENST00000566263 604 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 MIR4444-1-201ENST00000581696 74 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.2□□□□□ -1.9
HNF4AP41235 MIR4444-2-201ENST00000584390 74 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 MIR3611-201ENST00000584484 83 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.2□□□□□ -1.9
HNF4AP41235 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.2□□□□□ -1.9
HNF4AP41235 AC068276.1-201ENST00000605793 379 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AC010678.1-201ENST00000614118 713 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AC244100.1-202ENST00000621554 382 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AC002064.3-201ENST00000623448 346 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AC019226.1-201ENST00000625666 515 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 U6.105-201ENST00000637379 88 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 MTND4P4-201ENST00000439033 1366 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AL049781.1-201ENST00000623195 3585 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
HNF4AP41235 AL138713.1-201ENST00000624026 2130 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 AC004972.1-201ENST00000623934 2209 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
HNF4AP41235 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
HNF4AP41235 Z83843.1-201ENST00000604070 3685 ntBASIC3.2□□□□□ -1.9
HNF4AP41235 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.19□□□□□ -1.9
HNF4AP41235 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HNF4AP41235 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HNF4AP41235 DYNLT3P1-201ENST00000378574 347 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 SNORD21-201ENST00000383953 95 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 MIR7-3-201ENST00000384898 110 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 MIR183-201ENST00000384958 110 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 U3.20-201ENST00000390909 217 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms