Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 AL356320.1-201ENST00000429616 163 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 VN1R10P-201ENST00000447106 875 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 LARP1BP2-201ENST00000486594 519 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 RPS27P21-201ENST00000486977 252 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 RPL23AP49-201ENST00000492925 468 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 SCARNA17.1-201ENST00000516211 143 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 SCARNA17.2-201ENST00000516334 143 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 RNU6-1256P-201ENST00000516539 103 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
HLA-DMBP28068 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 AC087465.1-201ENST00000560574 245 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
HLA-DMBP28068 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 AP003973.1-201ENST00000604639 691 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 AP001521.1-201ENST00000609150 300 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 SCARNA17.4-201ENST00000614296 143 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 AC009090.3-201ENST00000616553 565 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.66□□□□□ -2.14
HLA-DMBP28068 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 AC005832.2-201ENST00000538921 1430 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.66□□□□□ -2.14
HLA-DMBP28068 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
HLA-DMBP28068 AL109809.4-201ENST00000603520 2185 ntBASIC1.65□□□□□ -2.14
HLA-DMBP28068 AC010329.5-201ENST00000623497 2174 ntBASIC1.65□□□□□ -2.14
HLA-DMBP28068 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
HLA-DMBP28068 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
HLA-DMBP28068 HMGB1P17-201ENST00000403495 628 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 BTF3P7-201ENST00000407097 488 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 RNU6-1328P-201ENST00000410938 106 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 AL121882.1-201ENST00000422893 417 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 SRIP2-201ENST00000428470 166 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 AL139415.2-201ENST00000431968 163 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 USP12PX-201ENST00000432383 1057 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
HLA-DMBP28068 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 Z82210.1-201ENST00000440037 231 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 DDX3P2-201ENST00000446138 111 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 GXYLT1P1-201ENST00000446657 490 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
HLA-DMBP28068 AP1S2P1-201ENST00000457344 379 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 AL049874.1-201ENST00000489560 388 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 AC022493.1-201ENST00000492984 337 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 AC138853.1-201ENST00000503549 823 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 AL132857.1-201ENST00000555180 708 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 AC124283.4-201ENST00000581815 456 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 AL161729.4-201ENST00000604650 476 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 AC004853.1-201ENST00000604902 698 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 AC013562.2-201ENST00000611632 603 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 DUXAP10-204ENST00000612052 616 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 AC098657.3-201ENST00000620434 263 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 AC012640.5-201ENST00000623897 319 ntBASIC1.65□□□□□ -2.15
HLA-DMBP28068 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC1.65□□□□□ -2.15
HLA-DMBP28068 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.15
HLA-DMBP28068 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.65□□□□□ -2.15
HLA-DMBP28068 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.65□□□□□ -2.15
HLA-DMBP28068 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC1.64□□□□□ -2.15
HLA-DMBP28068 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
HLA-DMBP28068 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.64□□□□□ -2.15
HLA-DMBP28068 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
HLA-DMBP28068 OR56A5-201ENST00000340110 738 ntBASIC1.64□□□□□ -2.15
HLA-DMBP28068 RN7SKP223-201ENST00000410582 62 ntBASIC1.64□□□□□ -2.15
HLA-DMBP28068 RNU6-920P-201ENST00000410926 92 ntBASIC1.64□□□□□ -2.15
HLA-DMBP28068 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.64□□□□□ -2.15
HLA-DMBP28068 DPH3P2-201ENST00000422618 250 ntBASIC1.64□□□□□ -2.15
HLA-DMBP28068 PTP4A1P7-201ENST00000423476 514 ntBASIC1.64□□□□□ -2.15
HLA-DMBP28068 PPP1R11P2-201ENST00000423543 382 ntBASIC1.64□□□□□ -2.15
HLA-DMBP28068 AL590233.1-201ENST00000430017 456 ntBASIC1.64□□□□□ -2.15
HLA-DMBP28068 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC1.64□□□□□ -2.15
HLA-DMBP28068 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
HLA-DMBP28068 GPM6BP3-201ENST00000442797 145 ntBASIC1.64□□□□□ -2.15
HLA-DMBP28068 FAM103A2P-201ENST00000444122 354 ntBASIC1.64□□□□□ -2.15
HLA-DMBP28068 AL591719.1-201ENST00000444669 744 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms