Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 SNORA62-201ENST00000365493 153 ntBASIC5.5□□□□□ -1.53
RFX1P22670 SNORD73A-201ENST00000386062 65 ntBASIC5.5□□□□□ -1.53
RFX1P22670 AL445529.1-201ENST00000398713 389 ntBASIC5.5□□□□□ -1.53
RFX1P22670 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
RFX1P22670 RNU6-174P-201ENST00000410406 106 ntBASIC5.5□□□□□ -1.53
RFX1P22670 AL096701.2-201ENST00000416920 238 ntBASIC5.5□□□□□ -1.53
RFX1P22670 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.5□□□□□ -1.53
RFX1P22670 AL133396.1-201ENST00000432048 687 ntBASIC5.5□□□□□ -1.53
RFX1P22670 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.5□□□□□ -1.53
RFX1P22670 AC073587.1-201ENST00000447093 876 ntBASIC5.5□□□□□ -1.53
RFX1P22670 HMGB3P30-201ENST00000457863 606 ntBASIC5.5□□□□□ -1.53
RFX1P22670 RN7SL443P-201ENST00000464331 290 ntBASIC5.5□□□□□ -1.53
RFX1P22670 RPL7P5-201ENST00000471472 736 ntBASIC5.5□□□□□ -1.53
RFX1P22670 RN7SL459P-201ENST00000481078 302 ntBASIC5.5□□□□□ -1.53
RFX1P22670 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC5.5□□□□□ -1.53
RFX1P22670 RN7SL346P-201ENST00000491561 294 ntBASIC5.5□□□□□ -1.53
RFX1P22670 AC009643.1-201ENST00000532030 391 ntBASIC5.5□□□□□ -1.53
RFX1P22670 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.5□□□□□ -1.53
RFX1P22670 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC5.5□□□□□ -1.53
RFX1P22670 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC5.5□□□□□ -1.53
RFX1P22670 AC093227.2-201ENST00000589357 285 ntBASIC5.5□□□□□ -1.53
RFX1P22670 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC5.5□□□□□ -1.53
RFX1P22670 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.5□□□□□ -1.53
RFX1P22670 AL020997.2-201ENST00000602607 184 ntBASIC5.5□□□□□ -1.53
RFX1P22670 AC092447.9-201ENST00000603395 144 ntBASIC5.5□□□□□ -1.53
RFX1P22670 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC5.5□□□□□ -1.53
RFX1P22670 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.5□□□□□ -1.53
RFX1P22670 U4.1-201ENST00000620349 87 ntBASIC5.5□□□□□ -1.53
RFX1P22670 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
RFX1P22670 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.5□□□□□ -1.53
RFX1P22670 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
RFX1P22670 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.49□□□□□ -1.53
RFX1P22670 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.49□□□□□ -1.53
RFX1P22670 AL450345.1-202ENST00000605741 3881 ntBASIC5.49□□□□□ -1.53
RFX1P22670 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
RFX1P22670 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.49□□□□□ -1.53
RFX1P22670 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
RFX1P22670 Y_RNA.176-201ENST00000363815 109 ntBASIC5.49□□□□□ -1.53
RFX1P22670 Y_RNA.193-201ENST00000363979 102 ntBASIC5.49□□□□□ -1.53
RFX1P22670 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.49□□□□□ -1.53
RFX1P22670 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC5.49□□□□□ -1.53
RFX1P22670 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
RFX1P22670 AC093151.1-201ENST00000427711 313 ntBASIC5.49□□□□□ -1.53
RFX1P22670 MYL8P-204ENST00000431574 518 ntBASIC5.49□□□□□ -1.53
RFX1P22670 AC108059.2-201ENST00000434626 151 ntBASIC5.49□□□□□ -1.53
RFX1P22670 RPL12P18-201ENST00000437175 325 ntBASIC5.49□□□□□ -1.53
RFX1P22670 RPS29P9-201ENST00000440360 171 ntBASIC5.49□□□□□ -1.53
RFX1P22670 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC5.49□□□□□ -1.53
RFX1P22670 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC5.49□□□□□ -1.53
RFX1P22670 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
RFX1P22670 RN7SL354P-201ENST00000469282 294 ntBASIC5.49□□□□□ -1.53
RFX1P22670 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.49□□□□□ -1.53
RFX1P22670 RPL21P13-201ENST00000488305 481 ntBASIC5.49□□□□□ -1.53
RFX1P22670 AC018437.1-201ENST00000492214 406 ntBASIC5.49□□□□□ -1.53
RFX1P22670 HMGN1P11-201ENST00000508668 303 ntBASIC5.49□□□□□ -1.53
RFX1P22670 RPL23AP53-201ENST00000521854 457 ntBASIC5.49□□□□□ -1.53
RFX1P22670 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.49□□□□□ -1.53
RFX1P22670 AC004024.1-201ENST00000549244 247 ntBASIC5.49□□□□□ -1.53
RFX1P22670 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC5.49□□□□□ -1.53
RFX1P22670 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.49□□□□□ -1.53
RFX1P22670 AC068790.4-201ENST00000602474 263 ntBASIC5.49□□□□□ -1.53
RFX1P22670 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC5.49□□□□□ -1.53
RFX1P22670 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
RFX1P22670 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
RFX1P22670 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
RFX1P22670 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.48□□□□□ -1.53
RFX1P22670 SNURFL-201ENST00000309296 343 ntBASIC5.48□□□□□ -1.53
RFX1P22670 RN7SKP104-201ENST00000362605 328 ntBASIC5.48□□□□□ -1.53
RFX1P22670 SNORA7.2-201ENST00000364446 145 ntBASIC5.48□□□□□ -1.53
RFX1P22670 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.48□□□□□ -1.53
RFX1P22670 MIR1302-3-201ENST00000408128 138 ntBASIC5.48□□□□□ -1.53
RFX1P22670 SNORA11-201ENST00000408789 128 ntBASIC5.48□□□□□ -1.53
RFX1P22670 RNU6-1025P-201ENST00000410629 104 ntBASIC5.48□□□□□ -1.53
RFX1P22670 AC114482.1-201ENST00000418010 247 ntBASIC5.48□□□□□ -1.53
RFX1P22670 DDX39BP1-205ENST00000422507 192 ntBASIC5.48□□□□□ -1.53
RFX1P22670 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC5.48□□□□□ -1.53
RFX1P22670 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC5.48□□□□□ -1.53
RFX1P22670 HMGB1P12-201ENST00000438594 598 ntBASIC5.48□□□□□ -1.53
RFX1P22670 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC5.48□□□□□ -1.53
RFX1P22670 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.48□□□□□ -1.53
RFX1P22670 AC007991.1-201ENST00000522680 631 ntBASIC5.48□□□□□ -1.53
RFX1P22670 AC109446.1-201ENST00000566172 220 ntBASIC5.48□□□□□ -1.53
RFX1P22670 AC113195.1-201ENST00000579952 141 ntBASIC5.48□□□□□ -1.53
RFX1P22670 AC090132.2-201ENST00000615881 347 ntBASIC5.48□□□□□ -1.53
RFX1P22670 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.48□□□□□ -1.53
RFX1P22670 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.48□□□□□ -1.53
RFX1P22670 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
RFX1P22670 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5.48□□□□□ -1.53
RFX1P22670 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
RFX1P22670 AL359693.1-201ENST00000614959 2407 ntBASIC5.48□□□□□ -1.53
RFX1P22670 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
RFX1P22670 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
RFX1P22670 AC139713.2-214ENST00000642059 1811 ntBASIC5.48□□□□□ -1.53
RFX1P22670 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
RFX1P22670 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
RFX1P22670 AC009643.2-201ENST00000603543 1448 ntBASIC5.48□□□□□ -1.53
RFX1P22670 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.47□□□□□ -1.53
RFX1P22670 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.47□□□□□ -1.53
RFX1P22670 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
RFX1P22670 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms