Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU2-16P-201ENST00000410712 136 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AC007899.1-201ENST00000412776 775 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD4P09016 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD4P09016 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD4P09016 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD4P09016 USP9YP12-201ENST00000450481 570 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD4P09016 AL590365.1-201ENST00000450788 243 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXD4P09016 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD4P09016 RN7SL75P-201ENST00000461926 281 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 HMGB1P25-201ENST00000468402 607 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD4P09016 UBE2Q2P9-201ENST00000490086 202 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD4P09016 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD4P09016 AC004062.1-201ENST00000509926 645 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AC010625.1-201ENST00000511296 403 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 RN7SKP282-201ENST00000516824 299 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 SNORA31.26-201ENST00000517250 137 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXD4P09016 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD4P09016 AP002404.1-201ENST00000532005 451 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD4P09016 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD4P09016 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD4P09016 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD4P09016 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.93□□□□□ -1.94
HOXD4P09016 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXD4P09016 AC005771.1-201ENST00000585581 349 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AC087683.1-201ENST00000591187 441 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AC078795.2-201ENST00000602835 1252 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 SEPT7P9-203ENST00000604116 343 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AL162713.1-201ENST00000604480 262 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AC013562.2-201ENST00000611632 603 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 uc_338.1-201ENST00000612113 180 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD4P09016 AC018755.4-201ENST00000619715 454 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AL590240.3-201ENST00000621416 943 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AC006386.2-201ENST00000624491 75 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AC012005.1-201ENST00000624575 75 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AL603839.4-201ENST00000624658 1005 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AC091925.2-201ENST00000625059 256 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD4P09016 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD4P09016 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.92□□□□□ -1.94
HOXD4P09016 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD4P09016 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXD4P09016 RPL7P26-201ENST00000333817 754 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 RNU1-140P-201ENST00000365040 165 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 SNORD51-201ENST00000384320 80 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 Y_RNA.505-201ENST00000384489 102 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 RNU6-297P-201ENST00000384636 107 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD4P09016 AL356421.1-201ENST00000403255 413 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 AL138885.1-201ENST00000405921 675 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 RNU4-65P-201ENST00000410473 140 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 HMGN1P14-201ENST00000412459 517 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 RPL21P32-201ENST00000419877 477 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD4P09016 DUTP6-201ENST00000425573 462 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 EZH2P1-201ENST00000431167 291 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXD4P09016 RPL21P2-201ENST00000440049 481 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 FAM103A2P-201ENST00000444122 354 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD4P09016 NANOGNBP1-201ENST00000448444 480 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 Z82190.1-201ENST00000454534 490 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 RN7SL499P-201ENST00000481141 276 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 AC034222.1-201ENST00000494052 532 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 AC097462.2-201ENST00000504623 481 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 RNU1-61P-201ENST00000516107 151 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 RNU6-714P-201ENST00000516963 103 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD4P09016 AP003033.1-201ENST00000527244 415 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD4P09016 ZNF519P3-201ENST00000557158 1032 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD4P09016 AC090615.1-201ENST00000577519 154 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 MTND1P15-201ENST00000579262 949 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXD4P09016 AC067852.3-201ENST00000589177 561 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 AC004853.1-201ENST00000604902 698 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXD4P09016 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD4P09016 MIR622-201ENST00000638396 96 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
HOXD4P09016 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD4P09016 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
HOXD4P09016 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.92□□□□□ -1.94
HOXD4P09016 AC092447.10-201ENST00000620607 1652 ntBASIC2.92□□□□□ -1.94
HOXD4P09016 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.91□□□□□ -1.94
HOXD4P09016 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXD4P09016 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC2.91□□□□□ -1.94
HOXD4P09016 RNA5SP197-201ENST00000363357 119 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 SNORA80A-201ENST00000363922 136 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 RNU6-7-201ENST00000364784 107 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 RNU6-8-201ENST00000365467 107 ntBASIC2.91□□□□□ -1.94
HOXD4P09016 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms